1887

Abstract

The DNA genomes of isolates of rice tungro bacilliform virus from Bangladesh, India, Indonesia, Malaysia and Thailand were cloned and compared with that of the type isolate from the Philippines. Restriction endonuclease maps revealed differences between the isolates and cross-hybridization showed that they fell into two groups, those from the Indian subcontinent and those from south-east Asian countries. The genomes of isolates from the Indian subcontinent contained a deletion of 64 bp when compared with those from south-east Asia. The implications of this variation are discussed.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/0022-1317-77-5-847
1996-05-01
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/jgv/77/5/JV0770050847.html?itemId=/content/journal/jgv/10.1099/0022-1317-77-5-847&mimeType=html&fmt=ahah

References

  1. Anjaneyulu A., John V. T. 1972; Strains of rice tungro virus. Phytopathology 62:1116–1119
    [Google Scholar]
  2. Bao Y., Hull R. 1992; Characterization of the discontinuities in rice tungro bacilliform virus DNA. Journal of General Virology 73:1297–1301
    [Google Scholar]
  3. Cabauatan P. Q., Koganezawa H. 1994; Symptomatic strains of rice tungro bacilliform virus. International Rice Research News 19:211–12
    [Google Scholar]
  4. Cabauatan P. Q., Cabunagan R. C., Koganezawa H. 1994; Comparative transmission of two strains of rice tungro spherical virus in the Philippines. International Rice Research News 19:210–11
    [Google Scholar]
  5. Cabauatan P. Q., Cabunagan R. C., Koganezawa H. 1995; Biological variants of rice tungro viruses in the Philippines. Phytopathology 85:77–81
    [Google Scholar]
  6. Cook A. G., Perfect T. J. 1989; Population dynamics of three leafhopper vectors of rice tungro viruses, Nephotettix virescens (Distant), N. nigropictus (Stal) and Recilia dorsalis (Motschulsky) (Hemiptera: Cicadellidae) in farmers’ fields in the Philippines. Bulletin of Entomological Research 79:437–451
    [Google Scholar]
  7. Dahal G., Hibino H., Saxena R. C. 1990a; Association of leafhopper feeding behaviour with transmission of rice tungro to susceptible and resistant rice cultivars. Phytopathology 80:371–377
    [Google Scholar]
  8. Dahal G., Hibino H., Cabunagan R. C., Tiongco E. M., Flores Z. M., Aguiero V. M. 1990b; Changes in cultivar reaction to tungro due to changes in ‘virulence’ of the leafhopper vector. Phytopathology 80:659–665
    [Google Scholar]
  9. Dahal G., Dasgupta I., Lee G., Hull R. 1992; Comparative transmission of three tungro isolates by leafhoppers and an infectious rice tungro bacilliform virus clone by agroinoculation. Annals of Applied Biology 120:287–300
    [Google Scholar]
  10. Dasgupta I., Hull R., Eastop S., Poggi-Pollini C., Blakebrough M., Boulton M. I., Davies J. W. 1991; Rice tungro bacilliform DNA independently infects rice after Agrobacterium-mediated transfer. Journal of General Virology 72:1215–1221
    [Google Scholar]
  11. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12:387–395
    [Google Scholar]
  12. Dolores-Talens A. C., Escara-Wilke J. R., Cabauatan P. Q., Nelson R. J., Koganezawa H. 1994; Strain differentiation of rice tungro bacilliform virus by restriction fragment length analysis of polymerase chain reaction-amplified products. International Rice Research News 19:110–11
    [Google Scholar]
  13. Feinberg A. P., Vogelstein B. 1983; A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Analytical Biochemistry 132:6–13
    [Google Scholar]
  14. Fütterer J., Potrykus I., Brau M. P. V., Dasgupta I., Hull R., Hohn T. 1994; Splicing in a pararetrovirus. Virology 198:663–670
    [Google Scholar]
  15. Hay J. M., Jones M. C., Blakebrough M., Dasgupta I., Davies J. W., Hull R. 1991; An analysisof the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus. Nucleic Acids Research 19:2615–2621
    [Google Scholar]
  16. Herdt R. W. 1991; Research priorities for rice biotechnology. In Rice Biotechnology pp 19–54 Edited by Khush G. S., Toenniessen G. H. Wallingford: CAB International;
    [Google Scholar]
  17. Hibino H. 1983a; Transmission of two rice tungro-associated viruses and rice waika virus from doubly or singly infected source plants by leafhopper vectors. Plant Disease 67:774–777
    [Google Scholar]
  18. Hibino H. 1983b; Relationships of rice tungro bacilliform and rice tungro spherical virus with their vector Nephotettix virescens . Annals of the Phytopathological Society of Japan 49:545–553
    [Google Scholar]
  19. Hibino H. 1987; Rice tungro virus disease: current research and prospects. In Proceedings of the Workshop on Rice Tungro Virus pp 2–6 South Sulewasi: Indonesian Ministry of Agriculture;
    [Google Scholar]
  20. Hibino H., Roechan M., Sudarisman S. 1978; Association of two types of virus particles with penyakit habang (tungro disease) of rice in Indonesia. Phytopathology 68:1412–1416
    [Google Scholar]
  21. Hibino H., Tiongco E. R., Cabunagan R. C., Flores Z. M. 1987; Resistance to rice tungroassociated viruses in rice under experimental and natural conditions. Phytopathology 77:871–875
    [Google Scholar]
  22. Hibino H., Daquioag R. D., Mesina E. M., Aquiero V. M. 1990; Resistance in rice to tungro associated viruses. Plant Disease 74:923–926
    [Google Scholar]
  23. Hirochika H., Takatsuji H., Ubasawa A., Ikeda J.-E. 1985; Site-specific deletion of cauliflower mosaic virus DNA: possible involvement of RNA splicing and reverse transcription. EMBO Journal 4:1673–1680
    [Google Scholar]
  24. Howarth A. J., Gardner R. C., Messing J., Shepherd R. 1981; Nucleotide sequence of naturally occurring mutants of cauliflower mosaic virus. Virology 112:678–685
    [Google Scholar]
  25. Hsiao K. 1991; A fast and simple procedure for sequencing double-stranded DNA with Sequenase. Nucleic Acids Research 19:27–87
    [Google Scholar]
  26. Hull R. 1994; Resistance to plant viruses: obtaining genes by non-conventional approaches. Euphytica 75:195–205
    [Google Scholar]
  27. Hull R., Davies J. W. 1992; Approaches to non-conventional control of plant virus diseases. Critical Reviews in Plant Sciences 11:17–33
    [Google Scholar]
  28. Jones M., Gough K., Dasgupta I., Subba Rao B. L., Cliffe J., Qu R., Shen P., Kaniewska M., Blakebrough M., Davies J. W., Beachy R. N., Hull R. 1991; Rice tungro disease is caused by an RNA and a DNA virus. Journal of General Virology 72:757–761
    [Google Scholar]
  29. Kano H., Koizumi M., Noda H., Hibino H., Ishikawa K., Omura T., Cabauatan P. Q., Koganezawa H. 1992; Nucleotide sequence of capsid protein gene of rice tungro bacilliform virus. Archives of Virology 124:157–163
    [Google Scholar]
  30. Khush G., Virmani S. S. 1985; Breeding for disease resistance in rice. In Progress in Plant Breeding vol 1 pp 239–279 Edited by Russell G. E. Oxford: Blackwell;
    [Google Scholar]
  31. Kiss-László Z., Blanc S., Hohn T. 1995; Splicing of cauliflower mosaic virus 35S RNA is essential for viral infectivity. EMBO Journal 14:3552–3562
    [Google Scholar]
  32. Lockhart B. E. L. 1990; Evidence for a double-stranded circular DNA genome in a second group of plant viruses. Phytopathology 80:127–131
    [Google Scholar]
  33. Lockhart B. E. L., Olszewski N. E. 1993; Serological and genomic heterogeneity of banana streak badnavirus: implications for virus detection in Musa germplasm. In Breeding Banana and Plantain for Resistance to Diseases and Pests pp 105–113 Edited by Ganry J. Montpellier: CIRAD;
    [Google Scholar]
  34. Maule A., Hull R., Donson J. 1983; The application of spot hybridization to the detection of DNA and RNA viruses in plant tissues. Journal of Virological Methods 6:215–224
    [Google Scholar]
  35. Mishra M. D., Niazi F. R., Basu A. N., Ghosh A., Raychaudhuri S. P. 1976; Detection and characterization of a new strain of rice tungro virus in India. Plant Disease Reporter 60:23–25
    [Google Scholar]
  36. Nieuwolt S. 1981; The climates of continental southeast Asia. In World Survey of Climatology vol 9 Edited by Takahashi K., Arakawa H. Amsterdam: Elsevier;
    [Google Scholar]
  37. Padgett R. A., Grabowski P. J., Konarska M. M., Seiler S., Sharp P. A. 1986; Splicing of messenger RNA precursors. Annual Review of Biochemistry 55:1119–1150
    [Google Scholar]
  38. Qu R., Bhattacharya M., Laco G. S., De Kochko A., Subba Rao B. L., Kaniewska M. B., Elmer J. S., Rochester D. E., Smith C. S., Beachy R. N. 1991; Characterization of the genome of rice tungro bacilliform virus: comparison with commelina yellow mottle virus and caulimoviruses. Virology 185:354–364
    [Google Scholar]
  39. Rivera C. T., Ou S. H. 1967; Transmission studies of the two strains of rice tungro virus. Plant Disease Reporter 51:877–881
    [Google Scholar]
  40. Saito Y., Iwaki M., Usugi T. 1976; Association of two types of particles of tungro-group disease of rice. Annals of the Phyto-pathological Society of Japan 43:375
    [Google Scholar]
  41. Sama S., Hasanuddin H., Manwan L., Cabunagan R. C., Hibino H. 1991; Integrated management of rice tungro disease in South Sulawesi, Indonesia. Crop Protection 10:34–40
    [Google Scholar]
  42. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: A Laboratory Manual 2nd edn New York: Cold Spring Harbor Laboratory;
    [Google Scholar]
  43. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, U.S.A 74:5463–5467
    [Google Scholar]
  44. Scholthof H. B., Wu F. C., Richins R. D., Shepherd R. J. 1991; A naturally occurring deletion mutant of figwort mosaic virus (caulimovirus) is generated by RNA splicing. Virology 184:290–298
    [Google Scholar]
  45. Vaden V. R., Melcher U. 1990; Recombination sites in cauliflower mosaic virus DNA: implications for mechanisms of recombination. Virology 177:717–726
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/0022-1317-77-5-847
Loading
/content/journal/jgv/10.1099/0022-1317-77-5-847
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error