The nucleotide sequence of citrus leaf rugose virus RNA 1 Free

Abstract

The nucleotide sequence of citrus leaf rugose virus (CiLRV) RNA 1 consists of 3404 nucleotides and contains one open reading frame (ORF) which encodes a putative translation product of 1051 amino acids with a calculated of 118 339. Both the nucleotide sequence of CiLRV RNA 1 and its translated polypeptide share similarities with those of the RNA 1 of alfalfa mosaic virus. However, the relationship is not as close as that which exists between the polymerase signatures of the two viruses, which are found on RNA 2. This is the first report of the full-length sequence for the RNA 1 of an ilarvirus and completes the first sequence for an entire ilarvirus genome. If it is typical of members of the genus then, as has long been speculated, the genomic organization of ilarviruses is identical to that of other genera in the family .

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1995-12-01
2024-03-29
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References

  1. Ahlquist P. 1992; Bromovirus replication and transcription. Current Opinion in Genetics and Development 2:71–76
    [Google Scholar]
  2. Ahlquist P., Dasgupta R., Kaesberg P. 1984; Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication. Journal of Molecular Biology 172:369–383
    [Google Scholar]
  3. Angenent G. C., Posthumus E., Brederode F. T., Bol J. F. 1990; Genome structure of tobacco rattle virus strain PLB: further evidence on the occurrence of RNA recombination among tobra-viruses. Virology 171:271–274
    [Google Scholar]
  4. Bernal J. J., Moriones E., Garci′a-Arenal F. 1991; Evolutionary relationships in the cucumoviruses: nucleotide sequence of tomato aspermy virus RNA 1. Journal of General Virology 72:2191–2195
    [Google Scholar]
  5. Bruenn J. 1991; Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases. Nucleic Acids Research 19:217–226
    [Google Scholar]
  6. Candresse T., Morch M. D., Dunez J. 1990; Multiple alignment and hierarchical clustering of conserved amino acid sequences in the replication-associated proteins of plant RNA viruses. Research in Virology 141:315–329
    [Google Scholar]
  7. Cornelissen B. J., Brederode F. T., Moormann R. J., Bol J. F. 1983; Complete nucleotide sequence of alfalfa mosaic virus RNA 1. Nucleic Acids Research 11:1253–1265
    [Google Scholar]
  8. De Bellis G., Manoni M., Pergolizzi M. E., Redolfi M. E., Luzzana M. 1992; A more stringent choice of primers can improve the performance of fluorescent automated DNA sequencers. BioTechniques 13:892–897
    [Google Scholar]
  9. Devereux J., FIaeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12:387–395
    [Google Scholar]
  10. Dzianott A. M., Bujarski J. J. 1991; The nucleotide sequence and genome organization of the RNA-1 segment in two bromo-viruses: broad bean mottle virus and cowpea chlorotic mottle virus. Virology 185:553–562
    [Google Scholar]
  11. Ge X., Scott S. W. 1994; The nucleotide sequence of citrus leaf rugose ilarvirus RNA-2. Journal of General Virology 75:2841–2846
    [Google Scholar]
  12. Goelet P., Lomonossoff G. P., Butler P. J., Akam M. E., Gait M. J., Karn J. 1982; Nucleotide sequence of tobacco mosaic virus RNA. Proceedings of the National Academy of Sciences, USA 79:5818–5822
    [Google Scholar]
  13. Gonsalves D., Garnsey S. M. 1975; Functional equivalence of an RNA component and coat protein for infectivity of citrus leaf rugose virus. Virology 64:23–31
    [Google Scholar]
  14. Gustafson G. D., Armour S. L., Gamboa G. C., Burgett S. G., Shepherd J. W. 1989; Nucleotide sequence of barley stripe mosaic virus RNA-alpha: RNA-alpha encodes a single polypeptide with homology to corresponding proteins from other viruses. Virology 170:370–377
    [Google Scholar]
  15. Hahn C. S., Lustig S., Strauss E. G., Strauss J. H. 1988; Western equine encephalitis virus is a recombinant virus. Proceedings of the National Academy of Sciences, USA 81:4358–1362
    [Google Scholar]
  16. Hamilton W. D. O., Boccara M., Robinson D. J., Baulcombe D. C. 1987; The complete nucleotide sequence of tobacco rattle virus RNA-1. Journal of General Virology 68:2563–2575
    [Google Scholar]
  17. Houser-Scott F., Baer M. L., Liem K. F., Cai J., Gehrke L. 1994; Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3′ untranslated region of alfalfa mosaic virus RNA 4. Journal of Virology 68:2194–2205
    [Google Scholar]
  18. Karasawa A., Nakaho K., Kakutani T., Minobe Y., Ehara Y. 1992; Nucleotide sequence analyses of peanut stunt cucumovirus RNAs 1 and 2. Journal of General Virology 73:701–707
    [Google Scholar]
  19. Kataoka J., Masuta C., Takanami Y. 1990; Complete nucleotide sequence of RNA1 of cucumber mosaic virus Y strain and evolutionary relationships among genome RNAs of the virus strains. Annals of the Phytopathological Society of Japan 56:501–507
    [Google Scholar]
  20. Koper-Zwarthoff E. C., Bol J. F. 1980; Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus. Nucleic Acids Research 8:3307–3318
    [Google Scholar]
  21. Lutcke H. A., Chow K. C., Mickel F. S., Moss K. A., Kern H. F., Scheele G. A. 1987; Selection of AUG initiation codons differs in plants and animals. EM BO Journal 6:43–18
    [Google Scholar]
  22. Macfarlane S. A., Taylor S. C., King D. I., Hughes G., Davies J. W. 1989; Pea early browning virus RNA 1 encodes 4 polypeptides including a putative zinc-finger protein. Nucleic Acids Research 17:2245–2260
    [Google Scholar]
  23. Mandl C. W., Heinz F. X., Puchhammer-Stockl E., Kunz C. 1991; Sequencing the termini of capped viral RNA by 5–3′ ligation and PCR. BioTechniques 10:484–486
    [Google Scholar]
  24. Murphy F. A., Fauquet C. M., Bishop D. H. L., Ghabrial S. A., Jarvis A. W., Martelli G. P., Mayo M. A., Summers M. D. (editors) 1995 Virus Taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses. Archives of Virology Supplement 10450–457
    [Google Scholar]
  25. Ohno T., Aoyagi M., Yamanashi Y., Saito H., Ikawa S., Meshi T., Okada Y. 1984; Nucleotide sequence of the tobacco mosaic virus (tomato strain) genome and comparison with the common strain genome. Journal of Biochemistry (Tokyo) 96:1915–1923
    [Google Scholar]
  26. Reusken C. B. E. M., Neeleman L., Bol J. F. 1994; The 3′-untranslated region of alfalfa mosaic virus RNA 3 contains at least two independent binding sites for viral coat protein. Nucleic Acids Research 22:1346–1353
    [Google Scholar]
  27. Rezaian M. A., Williams R. H. V., Symons R. H. 1985; Nucleotide sequence of cucumber mosaic virus RNA 1 - presence of sequence complementary to part of the viral satellite RNA and homologies with other viral RNAs. European Journal of Biochemistry 150:331–339
    [Google Scholar]
  28. Rice C. M., Strauss J. H. 1981; Synthesis, cleavage and sequence analysis of DNA complementary to the 26S messenger RNA of Sindbis virus. Journal of Molecular Biology 150:315–340
    [Google Scholar]
  29. Rizzo T. M., Palukaitis P. 1989; Nucleotide sequence and evolutionary relationships of cucumber mosaic virus (CMV) strains: CMV RNA 1. Journal of General Virology 70:1–11
    [Google Scholar]
  30. Robinson D. J., Hamilton W. D. O., Harrison B. D., Baulcombe D. C. 1987; Two anomalous tobravirus isolates: evidence for RNA recombination in nature. Journal of General Virology 68:2551–2561
    [Google Scholar]
  31. Scott S. W., Ge X. 1995; The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilarviruses. Journal of General Virology 76:957–963
    [Google Scholar]
  32. van Vloten-Doting L. 1975; Coat protein is required for infectivity of tobacco streak virus: biological equivalence of the coat proteins of tobacco streak virus and alfalfa mosaic virus. Virology 65:215–225
    [Google Scholar]
  33. van Vloten-Doting L., Jaspars E. M. J. 1977; Plant covirus systems: three component systems. In Comprehensive Virology vol 11 pp 1–53 Edited by Fraenkel-Conrat H., Wagner R. R. New York: Plenum Press;
    [Google Scholar]
  34. van Vloten-Doting L., Francki R. I. B., Fulton R. W., Kaper J. M., Lane L. C. 1981; Tricomaviridae: a proposed family of plant viruses with tripartite, single-stranded RNA genomes. Intervirology 15:198–203
    [Google Scholar]
  35. Ziegler A., Natsuaki T., Mayo M. A., Jolly C. A., Murant A. F. 1992; The nucleotide sequence of RNA-1 of raspberry bushy dwarf virus. Journal of General Virology 73:3213–3218
    [Google Scholar]
  36. Ziegler A., Mayo M. A., Murant A. F. 1993; Proposed classification of the bipartite-genomed raspberry bushy dwarf idaeovirus with tripartite-genomed viruses in the family Bromoviridae . Archives of Virology 131:483–488
    [Google Scholar]
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