Vaccinia virus encodes four putative DNA and/or RNA helicases distantly related to each other

References

1. Ahn B.-Y., Moss B. 1989; Capped poly(A) leaders of variable lengths at the 5′ ends of vaccinia virus late mRNAs. Journal of Virology 63:266–232
   [Google Scholar]
2. Bertholet C., Van Meir E., Heggeler-Bordier B., Wittek R. 1987; Vaccinia virus produces late mRNAs by discontinuous synthesis. Cell 50:153–162
   [Google Scholar]
3. Black M. E., Hruby D. E. 1990; Identification of the ATP-binding domain of vaccinia virus thymidine kinase. Journal of Biological Chemistry 265:17584–17592
   [Google Scholar]
4. Blinov V. M., Koonin E. V., Gorbalenya A. E., Kaliman A. V., Kryukov V. M. 1989; Two early genes of bacteriophage T5 encode proteins containing an NTP-binding sequence motif and probably involved in DNA replication, recombination and repair. FEBS Letters 252:47–52
   [Google Scholar]
5. Boone R. F., Parr R. P., Moss B. 1979; Intermolecular duplexes formed from polyadenylated vaccinia virus RNA. Journal of Virology 30:365–374
   [Google Scholar]
6. Brodsky L. I., Drachev A. L., Tatuzov R. L., Chumakov K. M. 1991; GENEBEE: a package of computer programs for biopolymer sequence analysis. Biopolimery i Kletka 7:10–14 (in Russian)
   [Google Scholar]
7. Broyles S. S., Fesler B. S. 1990; Vaccinia virus gene encoding a component of the viral early transcription factor. Journal of Virology 64:1523–1529
   [Google Scholar]
8. Broyles S. S., Moss B. 1987; Identification of the vaccinia virus gene encoding nucleoside triphosphate phosphohydrolase I, a DNA-dependent ATPase. Journal of Virology 61:1738–1742
   [Google Scholar]
9. Company M., Arenas J., Abelson J. 1991; Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes. Nature, London 349:487–493
   [Google Scholar]
10. Fathi Z., Condit R. C. 1991a; Genetic and molecular biological characterization of a vaccinia virus temperature-sensitive complemenation group affecting a virion component. Virology 181:258–272
    [Google Scholar]
11. Fathi Z., Condit R. C. 1991b; Phenotypic characterization of a vaccinia virus temperature-sensitive complementation group affecting a virion component. Virology 181:273–276
    [Google Scholar]
12. Gershon P. D., Moss B. 1990; Early transcription factor subunits are encoded by vaccinia virus late genes. Proceedings of the National Academy of Sciences, U.S.A 87:4401–4405
    [Google Scholar]
13. Goebel S. J., Johnson G. P., Perkus M. E., Davis S. W., Winslow J. P., Paoletti E. 1990a; The complete DNA sequence of vaccinia virus. Virology 179:247–266
    [Google Scholar]
14. Goebel S. J., Johnson G. P., Perkus M. E., Davis S. W., Winslow J. P., Paoletti E. 1990b; Appendix to ‘The complete DNA sequence of vaccinia virus’. Virology 179:517–563
    [Google Scholar]
15. Gorbalenya A. E., Koonin E. V. 1989; Virus proteins containing the purine NTP-binding pattern. Nucleic Acids Research 17:8413–8440
    [Google Scholar]
16. Gorbalenya A. E., Koonin E. V., Donchenko A. P., Blinov V. M. 1989a; Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Research 17:4713–4730
    [Google Scholar]
17. Gorbalenya A. E., Blinov V. M., Donchenko A. P., Koonin E. V. 1989b; An NTP-binding motif is the most conserved sequence in a highly diverged group of proteins involved in positive strand RN A viral replication. Journal of Molecular Evolution 28:256–268
    [Google Scholar]
18. Hughes S. J., Johnston L. H., De Carlos A., Smith G. L. 1991; Vaccinia virus encodes an active thymidylate kinase that complements a cdc8 mutant of Saccharomyces cerevisiae . Journal of Biological Chemistry 266:20103–20109
    [Google Scholar]
19. Kahn J. S., Esteban M. 1990; Identification of the point mutations in two vaccinia virus nucleoside triphosphate phosphor-hydrolase I temperature-sensitive mutants and role of this DNA-dependent ATPase enzyme in virus gene expression. Virology 174:459–471
    [Google Scholar]
20. Koonin E. V. 1991; Similarities in RNA helicases. Nature, London 352:290
    [Google Scholar]
21. Koonin E. V., Senkevich T. G. 1992; Evolution of thymidine and thymidylate kinases: the possibility of independent capture of tk genes by different groups of viruses. Virus Genes (in press)
    [Google Scholar]
22. Leontovich A. M., Brodsky L. I., Gorbalenya A. E. 1990; Compile of a complete map of local similarity for two biopolymers (DotHelix program of the GenBee package). Biopolimeri i kletka 6:14–21 (in Russian)
    [Google Scholar]
23. Laín S., Riechmann J. L., Martin M. T., Garcia J. A. 1989; Homologous potyvirus and flavivirus proteins belonging to a super-family of helicase-like proteins. Gene 82:357–362
    [Google Scholar]
24. Lipman D. J., Pearson W. R. 1985; Rapid and sensitive protein similarity searches. Science 227:1435–1441
    [Google Scholar]
25. Linder P., Lasko P. F., Asnburner M., Leroy P., Nielsen P. J., Nishi K., Schnier J., Slonimski P. 1989; Birth of the D-E-A-D box. Nature, London 337:121–122
    [Google Scholar]
26. Pacha R. F., Meis R., Condit R. C. 1990; Structure and expression of the vaccinia virus gene which prevents virus-induced breakdown of RNA. Journal of Virology 64:3853–3863
    [Google Scholar]
27. Paoletti E., Moss B. 1974; Two nucleic acid-dependent nucleotide phosphohydrolases from vaccinia virus; nucleotide substrate and polynucleotide cofactor specificity. Journal of Biological Chemistry 249:3281–3286
    [Google Scholar]
28. Paoletti E., Rosemond-Hornbeak H., Moss B. 1974; Two nucleic acid-dependent nucleoside triphosphate phosphohydrolases from vaccinia virus. Purification and characterization. Journal of Biological Chemistry 249:3273–3280
    [Google Scholar]
29. Rodriguez J. F., Kahn J. S., Esteban M. 1986; Molecular cloning, encoding sequence, and expression of vaccinia virus nucleic acid-dependent nucleoside triphosphatase gene. Proceedings of the National Academy of Sciences, U.S.A 83:9566–9570
    [Google Scholar]
30. Roseman N. A., Hruby D. E. 1987; Nucleotide sequence and transcript organization of a region of the vaccinia virus genome which encodes a constitutively expressed gene required for DNA replication. Journal of Virology 61:1398–1406
    [Google Scholar]
31. Schwer B., Guthrie C. 1991; PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome. Nature, London 349:494–499
    [Google Scholar]
32. Schwer B., Visca P., Vos J. C., Stunnenberg H. G. 1987; Discontinuous transcription or RNA processing of vaccinia virus late messengers results in a 5′ poly(A) leader. Cell 50:163–169
    [Google Scholar]
33. Seraphin B., Simon M., Boulet A., Faye G. 1989; Mitochondrial splicing requires a protein from a novel helicase family. Nature, London 337:84–87
    [Google Scholar]
34. Smith G. L., De Carlos A., Chan Y. S. 1989; Vaccinia virus encodes a thymidylate kinase gene: sequence and transcriptional mapping. Nucleic Acids Research 17:7581–7590
    [Google Scholar]
35. Smith G. L., Chan Y. S., Howard S. T. 1991; Nucleotide sequence of 42 kbp of vaccinia virus strain WR from near the right inverted terminal repeat. Journal of General Virology 72:1349–1376
    [Google Scholar]
36. Walker J. E., Saraste M., Runswick M. J., Gay N. J. 1982; Distantly related sequences in the a- and b-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO Journal 1:945–951
    [Google Scholar]
37. Wassarman D. A., Steitz J. A. 1991; Alive with DEAD proteins. Nature, London 349:463–464
    [Google Scholar]
38. Weeda G., Van Ham R. C. A., Vermeulen W., Bootsma D., Van Der Eb A. J., Hoeumakers J. H. J. 1990; A presumed DNA helicase activity encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne’s syndrome. Cell 62:777–791
    [Google Scholar]
39. Weir J. P., Moss B. 1983; Nucleotide sequence of the vaccinia virus thymidine kinase gene and the nature of spontaneous frameshift mutations. Journal of Virology 46:530–537
    [Google Scholar]
40. Weir J. P., Bajszar G., Moss B. 1982; Mapping of the vaccinia virus thymidine kinase gene by marker rescue and by cell-free translation of selected mRNA. Proceedings of the National Academy of Sciences, U.S.A 79:1210–1214
    [Google Scholar]