1887

Journal of General Virology header logo

Volume 73, Issue 10

Phylogenetic Classification of Human Papillomaviruses: Correlation With Clinical Manifestations Free

Abstract

Human papillomaviruses (HPVs) are a heterogeneous group of small dsDNA viruses which cause a variety of proliferative epithelial lesions at specific anatomical sites. Although more than 65 different virus types have been cloned and characterized, no uniform classification system exists. In order to classify HPV DNA types, phylogenetic trees were constructed based on nucleotide sequence alignments using parsimony and distance matrix algorithms. The resulting phylogenetic trees provide a classification of the HPVs into specific groups encompassing the known tissue tropism and oncogenic potential of each HPV type. The implications of a phylogenetic taxonomy on the diagnostic detection of HPVs and the concept of different HPV species are discussed.

  • Received:
  • Accepted:
  • Published Online:
© Journal of General Virology 1992
Loading

Article metrics loading...

/content/journal/jgv/10.1099/0022-1317-73-10-2653
1992-10-01
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/jgv/73/10/JV0730102653.html?itemId=/content/journal/jgv/10.1099/0022-1317-73-10-2653&mimeType=html&fmt=ahah

References

  1. Barbosa M. S., Vass W. C., Lowy D. R., Schiller J. T. 1991; In vitro biological activities of the E6 and E7 genes vary among human papillomaviruses of different oncogenic potential. Journal of Virology 65:292–298
     [Google Scholar]
  2. Barnes W., Delgado G., Kurman R. J., Petrilli E. S., Smith D. M., Ahmed S., Lorincz A. T., Temple G. F., Jenson A. B., Lancaster W. D. 1988; Possible prognostic significance of human papillomavirus type in cervical cancer. Gynecological Oncology 29:267–273
     [Google Scholar]
  3. Boshart M., zur Hausen H. 1986; Human papillomaviruses in Buschke-Lowenstein tumors: physical state of the DNA and identification of a tandem duplication in the noncoding region of a human papillomavirus 6 subtype. Journal of Virology 58:963–966
     [Google Scholar]
  4. Centers for Disease Control 1983; Condyloma acuminatum – United States 1966-1981. Mortality and Morbidity Weekly Report 32:306–308
     [Google Scholar]
  5. Coggin J. R., zur Hausen H. 1979; Workshop on papillomaviruses and cancer. Cancer Research 39:545–546
     [Google Scholar]
  6. Cole S. T., Danos O. 1987; Nucleotide sequence and comparative analysis of the human papillomavirus type 18 genome. Phylogeny of papillomaviruses and repeated structure of the E6 and E7 gene products. Journal of Molecular Biology 193:599–608
     [Google Scholar]
  7. Cole S. T., Streeck R. E. 1986; Genome organization and nucleotide sequence of human papillomavirus type 33, which is associated with cervical cancer. Journal of Virology 58:991–995
     [Google Scholar]
  8. Crook T., Wrede D., Vousden K. H. 1991a; p53 point mutation in HPV negative human cervical carcinoma cell lines. Oncogene 6:873–875
     [Google Scholar]
  9. Crook T., Tidy J. A., Vousden K. H. 1991b; Degradation of p53 can be targeted by HPV E6 sequences distinct from those required for p53 binding and trans-activation. Cell 67:547–556
     [Google Scholar]
  10. Cullen A. P., Reid R., Campion M., Lorincz A. T. 1991; Analysis of the physical state of different papillomavirus DNAs in intraepithelial and invasive cervical neoplasm. Journal of Virology 65:606–612
     [Google Scholar]
  11. Danos O., Katinka M., Yaniv M. 1982; Human papillomavirus la complete DNA sequence: a novel type of genome organization among Papovaviridae. EMBO Journal 1:231–236
     [Google Scholar]
  12. Dartmann K., Schwarz E., Gissmann L., zur Hausen H. 1986; The nucleotide sequence and genome organization of human papillomavirus type 11. Virology 151:124–130
     [Google Scholar]
  13. Dawson D. F., Duckworth J. K., Bernhardt H., Young J. M. 1965; Giant condyloma and verrucous carcinoma of the genital area. Archives of Pathology 79:225–231
     [Google Scholar]
  14. Deau M.-C., Favre M., Orth G. 1991; Genetic heterogeneity among human papillomaviruses associated with epidermodysplasia verruciformis: evidence for multiple allelic forms of HPV5 and HPV8 E6 genes. Virology 184:492–503
     [Google Scholar]
  15. de Villiers E.-M. 1989; Heterogeneity of the human papillomavirus group. Journal of Virology 63:4898–4903
     [Google Scholar]
  16. DiLorenzo T. P., Tamsen A., Abramson A. L., Steinberg B. M. 1992; Human papillomavirus type 6a DNA in the lung carcinoma of a patient with recurrent laryngeal papillomatosis is characterized by a partial duplication. Journal of General Virology 73:423–428
     [Google Scholar]
  17. Dyall-Smith D., Trowell H., Mark A., Dyall-Smith M. 1991; Cutaneous squamous cell carcinomas and papillomaviruses in renal transplant recipients: a clinical and molecular biological study. Journal of Dermatological Science 2:139–146
     [Google Scholar]
  18. Dyson N., Howley P. M., Munger K., Harlow E. 1989; The human papillomavirus-16 E7 oncoprotein is able to bind to the retinoblastoma gene product. Science 243:934–937
     [Google Scholar]
  19. Eliezri Y. D., Silverstein S. J., Nuovo G. J. 1990; Occurrence of human papillomavirus type 16 DNA in cutaneous squamous and basal cell neoplasms. Journal of the American Academy of Dermatology 23:836–842
     [Google Scholar]
  20. Franquemont D. W., Ward B. E., Anderson W. A., Crum C. P. 1989; Prediction of ‘high-risk’ cervical papillomavirus infection by biopsy morphology. American Journal of Clinical Pathology 92:577–582
     [Google Scholar]
  21. Frisque R. 1991; Papovaviridae. In Classification and Nomenclature of Viruses: Fifth Report of the International Committee on Taxonomy of Viruses pp. 146–149 Edited by Francki R. I. B., Fauquet C. M., Knudson D. L., Brown F. New York: Springer-Verlag;
     [Google Scholar]
  22. Fuchs P. G., Iftner T., Weninger J., Pfister H. 1986; Epidermodyslpasia verruciformis-associated human papillomavirus 8: genomic sequence and comparative analysis. Journal of Virology 58:626–634
     [Google Scholar]
  23. Goldsborough M. D., DiSilvestre D., Temple G. F., Lorincz A. T. 1989; Nucleotide sequence of human papillomavirus type 31: a cervical neoplasia-associated virus. Virology 171:306–311
     [Google Scholar]
  24. Gorman B. M. 1984; Application of evolutionary species concepts to viruses. Abstracts of the Sixth International Congress of Virology, Sendai p 388
     [Google Scholar]
  25. Grussendorf-Conen E.-I. 1987; Papillomavirus-induced tumors of the skin: cutaneous warts and epidermodysplasia verruciformis. In Papillomaviruses and Human Disease pp. 158–181 Edited by Syijänen K., Gissmann L., Koss L. G. Berlin: Springer-Verlag;
     [Google Scholar]
  26. Guitart J., Bergfeld W. F., Tuthill R. J., Tubbs R. R., Zienowicz R., Fleegler E. J. 1990; Squamous cell carcinoma of the nail bed: a clinico-pathological study of 12 cases. British Journal of Dermatology 123:215–222
     [Google Scholar]
  27. Higgins D. G., Sharp P. M. 1988; Clustal: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237–244
     [Google Scholar]
  28. Hirsch-Behnam A., Delius H., de Villiers E. -M. 1990; A comparative sequence analysis of two human papillomaviruses types 2a and 57. Virus Research 18:81–98
     [Google Scholar]
  29. Hoshikawa T., Nakajima T., Uhara H., Gotoh M., Shimosato Y., Tsutsumi K., Ono I., Ebihara S. 1990; Detection of human papillomavirus DNA in laryngeal squamous cell carcinomas by polymerase chain reaction. Laryngoscope 100:647–650
     [Google Scholar]
  30. Iftner T., Bierfelder S., Csapo Z., Pfister H. 1988; Involvement of human papillomavirus type 8 genes E6 and E7 in transformation and replication. Journal of Virology 62:3655–3661
     [Google Scholar]
  31. Kasher M. S., Roman A. 1988; Characterization of human papillomavirus type 6b DNA isolated from an invasive squamous carcinoma of the vulva. Virology 165:225–233
     [Google Scholar]
  32. Kashima H., Mounts P. 1987; Tumors of the head and neck, larynx, lung, and esophagus and their possible relation to HPV. In Papillomaviruses and Human Disease pp. 138–157 Edited by Syijänen K., Gissmann L., Koss L. G. Berlin: Springer-Verlag;
     [Google Scholar]
  33. Kawashima M., Favre M., Obalek S., Jablonska S., Orth G. 1990; Premalignant lesions and cancers of the skin in the general population: evaluation of the role of human papillomaviruses. Journal of Investigative Dermatology 95:537–542
     [Google Scholar]
  34. Kingsbury D. W. 1988; Biological concepts in virus classification. Intervirology 29:242–253
     [Google Scholar]
  35. Kirii Y., Iwamoto S., Matsukura T. 1991; Human papillomavirus type 58 DNA sequence. Virology 185:424–427
     [Google Scholar]
  36. Kiyono T., Adachi A., Ishibashi M. 1990; Genome organization and taxonomic position of human papillomavirus type 47 inferred from its DNA sequence. Virology 177:401–405
     [Google Scholar]
  37. Kiyono T., Hiraiwa A., Ishibashi M. 1992; Differences in transforming activity and coded amino acid sequence among E6 genes of several papillomaviruses associated with epidermodysplasia verruciformis. Virology 186:628–639
     [Google Scholar]
  38. Kurman R. J., Schiffman M. H., Lancaster W. D., Reid R., Jenson A. B., Temple G. F., Lorincz A. T. 1988; Analysis of individual human papillomavirus types in cervical neoplasia: a possible role for type 18 in rapid progression. American Journal of Obstetrics and Gynecology 159:293–296
     [Google Scholar]
  39. Lindeberg H., Syrjanen S., Karja J., Syrjanen K. 1989; Human papillomavirus type 11 DNA in squamous cell carcinomas and pre-existing multiple laryngeal papillomas. Acta otolaryngologica 107:141–149
     [Google Scholar]
  40. Lorincz A. T., Quinn A. P., Goldsborough M. D., Schmidt B. J., Temple G. F. 1989a; Cloning and partial DNA sequencing of two new human papillomavirus types associated with condylomas and low-grade cervical neoplasia. Journal of Virology 63:2829–2834
     [Google Scholar]
  41. Lorincz A. T., Quinn A. P., Goldsborough M. D., McAllister P., Temple G. F. 1989b; Human papillomavirus type 56: a new virus detected in cervical cancers. Journal of General Virology 70:3099–3104
     [Google Scholar]
  42. Lorincz A. T., Reid R., Jenson A. B., Greenberg M. D., Lancaster W., Kurman R. J. 1992; Human papillomavirus infection of the cervix: relative risk associations of 15 common anogenital types. Obstetrics and Gynecology 79:328–337
     [Google Scholar]
  43. Lungu O., Crum C. P., Silverstein S. 1991; Biologic properties and nucleotide sequence analysis of human papillomavirus type 51. Journal of Virology 65:4216–4225
     [Google Scholar]
  44. Lungu O., Wei Sun X., Felix J., Richart R. M., Silverstein S., Wright T. C. 1992; Relationship of human papillomavirus type to grade of cervical intraepithelial neoplasia. Journal of the American Medical Association 267:2493–2496
     [Google Scholar]
  45. McCullough D. W., McNicol P. J. 1991; Laryngeal carcinoma associated with human papillomavirus type 16. Journal of Otolaryngology 20:97–99
     [Google Scholar]
  46. Manos M. M., Ting Y., Wright D. K., Lewis A. J., Broker T. R., Wolinsky S. M. 1989; The use of polymerase chain reaction amplification for the detection of genital human papillomaviruses. Cancer Cells 7:209–214
     [Google Scholar]
  47. Marich J. E., Pontsler A. V., Rice S. M., McGraw K. A., Dubensky T. W. 1992; The phylogenetic relationship and complete nucleotide sequence of human papillomavirus type 35. Virology 186:770–776
     [Google Scholar]
  48. Morrison E. A. B., Ho G. Y. F., Vermund S. H., Goldberg G. L., Kadish A. S., Kelley K. F., Burk R. D. 1991; Human papillomavirus infection and other risk factors for cervical neoplasia: a case control study. International Journal of Cancer 49:6–13
     [Google Scholar]
  49. Mounts P., Shah K., Kashima H. 1982; Viral etiology of juvenile and adult-onset squamous papilloma of the larynx. Proceedings of the National Academy of Sciences, U.S.A. 79:5425–5429
     [Google Scholar]
  50. Moy R. L., Eliezri Y. D., Nuovo G. J., Zitelli J. A., Bennett R. G., Silverstein S. 1989; Human papillomavirus type 16 DNA in periungual squamous cell carcinomas. Journal of the American Medical Association 261:2669–2673
     [Google Scholar]
  51. Naghashfar Z. S., Rosenshein N. B., Lorincz A. T., Buscema J., Shah K. V. 1987; Characterization of human papillomavirus type 45, a new type 18-related virus of the genital tract. Journal of General Virology 68:3073–3079
     [Google Scholar]
  52. Oriel D. 1990; Genital human papillomavirus infection. In Sexually Transmitted Diseases pp. 433–441 Edited by Botchan K. K., Mardh P. A., Sparling P. F., Wiesner P. J. New York: McGraw-Hill;
     [Google Scholar]
  53. Orth G. 1986; Epidermodysplasia verruciformis: a model for understanding the oncogenicity of human papillomaviruses. In Papillomaviruses. CIBA Foundation Symposium 120 pp. 157–174 Edited by Evered D., Clark S. New York: John Wiley & Sons;
     [Google Scholar]
  54. Orth G., Jablonska S., Jarzabek-Chorzelska M., Rseza S., Obalek S., Favre M., Croissant O. 1979; Characteristics of the lesions and risk of malignant conversion associated with type of human papillomavirus involved in epidermodysplasia verruciformis. Cancer Research 39:1074–1082
     [Google Scholar]
  55. Ostrow R. S., Shaver K., Turnquist S., Viksnins A., Bender M., Vance C., Kaye V., Faras A. J. 1989; Human papillomavirus-16 DNA in a cutaneous invasive cancer. Archives of Dermatology 125:666–669
     [Google Scholar]
  56. Pecoraro G., Morgan D., Defendi V. 1989; Differential effects of human papillomavirus type 6, 16, and 18 DNAs on immortalization and transformation of human cervical epithelial cells. Proceedings of the National Academy of Sciences, U.S.A. 86:563–567
     [Google Scholar]
  57. Perez-Ayala M., Ruiz-Cabello F., Esteban F., Concha A., Redondo M., Oliva M. R., Cabrera T., Garrido F. 1990; Presence of HPV 16 sequences in laryngeal carcinomas. International Journal of Cancer 46:8–11
     [Google Scholar]
  58. Pfister H. 1990; General introduction to papillomaviruses; properties of the virions and classification. In Papillomaviruses and Human Cancer pp. 2–4 Edited by Pfister H. Boca Raton: CRC Press;
     [Google Scholar]
  59. Philipp W., Honore N., Sapp M., Cole S. T., Streeck R. E. 1992; Human papillomavirus type 42: new sequences, conserved genome organization. Virology 186:331–334
     [Google Scholar]
  60. Rando R. F., Groff D. E., Chirikjian J. G., Lancaster W. D. 1986a; Isolation and characterization of a novel human papillomavirus type 6 DNA from an invasive vulvar carcinoma. Journal of Virology 57:353–356
     [Google Scholar]
  61. Rando R. F., Lancaster W. D., Han P., Lopez C. 1986b; The noncoding region of HPV-6vc contains two distinct transcriptional enhancing elements. Virology 155:545–556
     [Google Scholar]
  62. Reuter S., Delius H., Kahn T., Hofmann B., zur Hausen H., Schwarz E. 1991; Characterization of a novel human papillomavirus DNA in the cervical carcinoma cell line ME180. Journal of Virology 65:5564–5568
     [Google Scholar]
  63. Rolighed J., Sorensen I. M., Jacobson N. O., Lindeberg H. 1991; The presence of HPV types 6/11, 13, 16 and 33 in bowenoid papulosis in an HIV-positive male, demonstrated by DNA in situ hybridization. Acta pathologica, microbiologica et immunologica Scandinavica 99:583–585
     [Google Scholar]
  64. Rosen M., Auborn K. 1991; Duplication of the upstream regulatory sequences increases the transformation potential of human papillomavirus type 11. Virology 185:484–487
     [Google Scholar]
  65. Scheffner M., Werness B. A., Huibregtse J. M., Levine A. J., Howley P. M. 1990; The E6 oncoprotein encoded by human papillomavirus types 16 and 18 promotes the degradation of p53. Cell 63:1129–1136
     [Google Scholar]
  66. Schlegel R., Phelps W. C., Zhang Y. -L., Barbosa M. 1988; Quantitative keratinocyte assay detects two biological activities of human papillomavirus DNA and identifies viral types associated with cervical carcinoma. EMBO Journal 7:3181–3187
     [Google Scholar]
  67. Schwarz E., Durst M., Demankowski C., Lattermann O., Zech R., Wolfsperger E., Suhai S., zur Hausen H. 1983; DNA sequence and genome organization of genital human papillomavirus type 6b. EMBO Journal 2:2341–2348
     [Google Scholar]
  68. Seedorf K., Krammer G., Durst M., Suhai S., Rowekamp W. G. 1985; Human papillomavirus type 16 DNA sequence. Virology 145:181–185
     [Google Scholar]
  69. Shimoda K., Lorincz A. T., Temple G. F., Lancaster W. D. 1988; Human papillomavirus type 52: a new virus associated with cervical neoplasia. Journal of General Virology 69:2925–2928
     [Google Scholar]
  70. Snijders P. J. F., van den Brule A. J. C., Schrijnemakers H. F. J., Snow G., Meijer C. J. L. M., Walboomers J. M. M. 1990; The use of general primers in the polymerase chain reaction permits the detection of a broad spectrum of human papillomavirus genotypes. Journal of General Virology 71:173–181
     [Google Scholar]
  71. Sokal R., Sneath P. H. A. 1963 Principles of Numerical Taxonomy San Fransisco: Freeman;
     [Google Scholar]
  72. Storey A., Pim D., Murray A., Osborn K., Banks L., Crawford L. 1988; Comparison of the in vitro transforming activities of human papillomavirus types. EMBO Journal 7:1815–1820
     [Google Scholar]
  73. Sutton G. P., Stehman F. B., Ehrlich C. E., Roman A. 1987; Human papillomavirus deoxyribonucleic acid in lesions of the female genital tract: evidence for type 6/11 in squamous carcinoma of the vulva. Obstetrics and Gynecology 70:564–568
     [Google Scholar]
  74. Swofford D. L. 1991; PAUP: Phylogenetic Analysis Using Parsimony, Version 3.0. Computer program and documentation. Illinois Natural History Survey; Champaign, Illinois, U.S.A:
     [Google Scholar]
  75. Syrjänen S. M. 1987; Human papillomavirus infections in the oral cavity. In Papillomaviruses and Human Disease pp. 104–137 Edited by Syrjänen K., Gissmann L., Koss L. G. Berlin: Springer-Verlag;
     [Google Scholar]
  76. Terry R. M., Lewis F. A., Griffiths S., Wells M., Bird C. C. 1987; Demonstration of human papillomavirus types 6 and 11 in juvenile laryngeal papillomatosis by in situ DNA hybridization. Journal of Pathology 153:245–248
     [Google Scholar]
  77. Van Ranst M., Fuse A., Fiten P., Beuken E., Pfister H., Burk R. D., Opdenakker G. 1992; Human papillomavirus type 13 and pygmy chimpanzee papillomavirus type 1: comparison of the genome organizations. Virology (in press)
    [Google Scholar]
  78. Van Regenmortel M. H. V. 1990; Virus species, a much overlooked but essential concept in virus classification. Intervirology 31:241–254
     [Google Scholar]
  79. Volpers C., Streeck R. E. 1991; Genome organization and nucleotide sequence of human papillomavirus type 39. Virology 181:419–423
     [Google Scholar]
  80. Vousden K. H. 1990; Human papillomavirus oncoproteins. Seminars in Cancer Biology 1:415–424
     [Google Scholar]
  81. Wilbur W. J., Lipman D. J. 1983; Rapid similarity searches of nucleic acid and protein data banks. Proceedings of the National Academy of Sciences, U.S.A. 80:726–730
     [Google Scholar]
  82. Wilczynski P. S., Walker J., Liao S. -Y., Bergen S., Berman M. 1988; Adenocarcinoma of the cervix associated with human papillomavirus. Cancer 62:1331–1336
     [Google Scholar]
  83. Woodworth C. D., Doniger J., DiPaolo J. A. 1989; Immortalization of human foreskin keratinocytes by various human papillomavirus DNAs corresponds to their association with cervical carcinoma. Journal of Virology 63:159–164
     [Google Scholar]
  84. Zachow K. R., Ostrow R. S., Faras A. J. 1987; Nucleotide sequence and genome organization of human papillomavirus type 5. Virology 158:251–254
     [Google Scholar]
  85. Zarod A. P., Rutherford J. D., Corbitt G. 1988; Malignant progression of laryngeal papilloma associated with human papillomavirus type 6 (HPV 6) DNA. Journal of Clinical Pathology 41:280–283
     [Google Scholar]
  86. zur Hausen H. 1991; Human papillomaviruses in the pathogenesis of anogenital cancer. Virology 184:9–13
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/0022-1317-73-10-2653
Loading
Phylogenetic Classification of Human Papillomaviruses: Correlation With Clinical Manifestations
J. Gen. Virol. 73, 2653 (1992); https://doi.org/10.1099/0022-1317-73-10-2653
/content/journal/jgv/10.1099/0022-1317-73-10-2653
/content/journal/jgv/10.1099/0022-1317-73-10-2653
Loading

Data & Media loading...

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error