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Volume 66,
Issue 6,
2016
Volume 66, Issue 6, 2016
- New taxa
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- Bacteroidetes
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Jiulongibacter sediminis gen. nov., sp. nov., a new member of the family Cytophagaceae, isolated from the surface sediment of the Jiulong River in China
More LessA bacterial strain, designated JN14-9T, was isolated from surface sediment of the Jiulong River and characterized in a taxonomic study using a polyphasic approach. Strain JN14-9T was Gram-stain-negative, non-motile, rod-shaped and orange-pigmented. It can grow at 15–37 °C (optimum 25–30 °C), at pH 7–8 (optimum pH 7) and in 2–6 % (w/v) NaCl (optimum 3–4 %). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain JN14-9T formed an independent lineage related to the family Cytophagaceae with low 16S rRNA gene sequence similarities (<92.5 %) to members of other genera with validly published names. The principal fatty acids of strain JN14-9T were summed feature 3 (C16:1ω6c/C16:1ω7c) and iso-C15:0. The isoprenoid quinone was identified as MK-7. The major polar lipids comprised diphosphatidylglycerol, phosphatidylethanolamine, three aminophospholipids and five unidentified phospholipids. The DNA G+C content was 41.6 mol%. Results of phenotypic, phylogenetic and chemotaxonomic analyses clearly indicate that strain JN14-9T represents a novel species of a new genus within the family Cytophagaceae , for which the name Jiulongibacter sediminis gen. nov., sp. nov. is proposed. The type strain of the type species is JN14-9T (=MCCC 1A00733T=KCTC 42153T).
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Pedobacter humi sp. nov., isolated from a playground soil
Huan Trinh and Tae-Hoo YiA Gram-stain-negative, aerobic, non-motile, rod-shaped and yellow-pigmented bacterium, designated strain THG S15-2T, was isolated from playground soil in Sindorim-dong, Guro-gu, Seoul, South Korea. According to 16S rRNA gene sequence comparisons, strain THG S15-2T was found to be related most closely to Pedobacter ginsengisoli Gsoil 104T (97.5 % similarity), Pedobacter panaciterrae Gsoil 042T (97.4 %), Pedobacter seoulensis THG-G12T (97.1 %) and Pedobacter caeni LMG 22862T (97.1 %). The level of DNA–DNA relatedness between strain THG S15-2T and its phylogenetically closest neighbours was below 30.0 %. The only isoprenoid quinone detected in strain THG S15-2T was menaquinone-7. The DNA G+C content was 45.9 mol%. The major polar lipid was phosphatidylethanolamine. The major component in the polyamine pattern was sym-homospermidine. The major fatty acids were identified as summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), iso-C15:0 and C16:0. These data supported the affiliation of strain THG S15-2T to the genus Pedobacter . Strain THG S15-2T was distinguished from related Pedobacter species by physiological and biochemical tests. Therefore, strain THG S15-2T represents a novel species, for which the name Pedobacter humi sp. nov. is proposed. The type strain is THG S15-2T (= KCTC 42735T = CCTCC AB 2015293T).
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- Firmicutes and related organisms
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Tumebacillus soli sp. nov., isolated from non-rhizosphere soil
More LessA Gram-stain-positive, strictly aerobic, motile, spore-forming, rod-shaped bacterial strain, CAU 11108T, was isolated from soil in Danghangpo, Republic of Korea, and its taxonomic position was investigated using a polyphasic approach. The bacterium grew optimally at 37 °C, at pH 8, and in the presence of 1 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequence similarity revealed that strain CAU 11108T formed a distinct lineage within the genus Tumebacillus and was most closely related to Tumebacillus luteolus U13T (98.2 %). The strain contained menaquinone-7 (MK-7) as the major respiratory quinone and iso-C15 : 0 and anteiso-C15 : 0 as the major fatty acids. The DNA G+C content was 54.6 mol%. On the basis of phenotypic differentiation, phylogenetic and chemotaxonomic data, strain CAU 11108T represents a novel species of the genus Tumebacillus , for which the name Tumebacillus soli sp. nov. is proposed. The type strain is CAU 11108T (=KCTC 33141T=CECT 8918T).
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Fermentibacillus polygoni gen. nov., sp. nov., an alkaliphile that reduces indigo dye
More LessFacultatively alkaliphilic strains, designated as strains IEB3T and IEB14, were isolated as indigo-reducing strains from a fermented Polygonum indigo (Polygonum tinctorium Lour) liquor sample prepared in our laboratory using a medium containing an indigo fermentation liquor as a sole substrate. The 16S rRNA gene sequence phylogeny and similarity suggested that strains IEB3T and IEB14 exhibit distinctive positions among the members of the genus Bacillus , and their closest neighbour was Bacillus nanhaiisediminis NH3T (similarity: 97.4 %) among the species with validly published names. The 16S rRNA sequence of strain IEB3Twas identical to that of strain IEB14. The cells of the isolates stained Gram-positive and were facultatively anaerobic, straight rods that were motile by a pair of subpolar flagella. Strains IEB3T and IEB14 grew at temperatures between 12 and 40 °C with optimum growth at 30‒33 °C and in the range of pH 7.5–12. Menaquinone-7 (MK-7) was detected as the major isoprenoid quinone. The DNA G+C contents of strains IEB3T and IEB14 were 49.1 and 49.9 mol%, respectively. The whole-cell fatty acid profile mainly (>10 %) consisted of iso-C14:0, iso-C15:0 and anteiso-C15:0. DNA–DNA hybridization revealed a low relatedness value between strain IEB3T and the phylogenetically most closely related species, Bacillus nanhaiisediminis JCM 16507T (<7 % ). On the basis of phenotypic and chemotaxonomic characteristics and phylogenetic data, the isolates represent a novel species within a novel genus, for which the name Fermentibacillus polygoni gen. nov., sp. nov. is proposed. The type strain is IEB3T (=JCM 30817T=NCIMB 14984T).
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Bacillus urumqiensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a salt lake
More LessA Gram-stain-positive, rod-shaped, aerobic and moderately haloalkaliphilic bacterium, designated BZ-SZ-XJ18T, was isolated from the mixed water and sediment of a saline-alkaline lake located in the Xinjiang Uyghur Autonomous Region of China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain BZ-SZ-XJ18T was a member of the genus Bacillus . The closest phylogenetic relatives were Bacillus saliphilus 6AGT (96.7 % 16S rRNA gene sequence similarity), ‘ Bacillus daqingensis’ X10-1 (96.6 %), Bacillus luteus JC167T (96.5 %), Bacillus daliensis DLS13T (96.2 %), Bacillus chagannorensis CG-15T (95.2 %) and Bacillus polygoni YN-1T (95.0 %). DNA–DNA relatedness between strain BZ-SZ-XJ18T and the reference type strains of the related species of the genus Bacillus was lower than 27 %. The isolate formed yellow pigment and grew in the presence of 0.22–4.32 M Na+ (equivalent to 1.3–25.3 %, w/v, NaCl) (optimum 1.08 M Na+, equivalent to 6.3 %, w/v, NaCl), at pH 6.5–10.0 (optimum pH 8.5–9.5) and at 8–41 ºC (optimum 37 ºC). The major cellular fatty acids were anteiso-C15:0 (43.0 %), C16:0 (18.1 %), iso-C15:0 (11.3 %), anteiso-C17:0 (8.0 %) and iso-C16:0 (7.0 %). The major polar lipids consisted of diphosphatidylglycerol and phosphatidylglycerol. The main respiratory quinone was menaquinone-7 (MK-7), and the peptidoglycan type of the cell wall was A1γ based on meso-diaminopimelic acid as the diagnostic diamino acid. The genomic DNA G+C content was 42.3 mol% (HPLC) or 41.4 mol% (T m). On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain BZ-SZ-XJ18T is proposed to represent a novel species, Bacillus urumqiensis within the genus Bacillus . The type strain is BZ-SZ-XJ18T (=DSM 29145T=JCM 30195T).
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Fictibacillus halophilus sp. nov., from a microbial mat of a hot spring atop the Himalayan Range
More LessA Gram-stain-positive staining, motile, endospore forming and moderately halophilic bacterium, designated as strain AS8T, was isolated from a microbial mat deposited at thermal discharges of Manikaran hot spring (with surface water temperature ~95 °C) located in Himachal Pradesh, India. 16S rRNA gene sequence based phylogenetic analysis revealed that strain AS8T belonged to the genus Fictibacillus with the highest sequence similarity to Fictibacillus nanhaiensis DSM 23009T (99.9 %) and Fictibacillus phosphorivorans Ca7T (99.9 %), followed by Fictibacillus barbaricus V2-BIII-A2T (99.1 %) and Fictibacillus arsenicus Con a/3T (97.4 %). The polar lipids fraction consisted of diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The cell-wall peptidoglycan was of the type A1γ based on directly cross-linked meso-diaminopimelic acid. The DNA G+C content of strain AS8T was found to be 46.9 mol%. The quinone system of strain AS8T consisted of MK-7 predominantly, and the polyamine pattern primarily contained spermidine and spermine. The major cellular fatty acids in strain AS8T were iso-C15:0, anteiso-C15:0 and iso-C16:0. The strain showed DNA–DNA relatedness of 52.7 % with F. nanhaiensis DSM 23009T, 50.7 % with F. phosphorivorans Ca7T, 34.8 % with F. barbaricus V2-BIII-A2T and 38.0 % with F. arsenicus Con a/3T. In spite of the high 16S rRNA gene sequence similarities, the DNA–DNA hybridization and gyr B gene sequencing results (≤87 %) supported by physiological and biochemical tests demonstrated that strain AS8T is a representative of a novel species, for which the name Fictibacillus halophilus sp. nov. is proposed. The type strain is AS8T (=MCC 2765T=DSM 100124T=KCTC 33758T).
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Genome analysis shows Bacillus axarquiensis is not a later heterotypic synonym of Bacillus mojavensis; reclassification of Bacillus malacitensis and Brevibacterium halotolerans as heterotypic synonyms of Bacillus axarquiensis
More LessBacillus axarquiensis and Bacillus malacitensis were previously reported to be later heterotypic synonyms of Bacillus mojavensis , based primarily on DNA–DNA relatedness values. We have sequenced draft genomes of Bacillus axarquiensis NRRL B-41617T and Bacillus malacitensis NRRL B-41618T. Comparative genomics and DNA–DNA relatedness calculations showed that while Bacillus axarquiensis and Bacillus malacitensis are synonymous with each other, they are not synonymous with Bacillus mojavensis . In addition, a draft genome was completed for Brevibacterium halotolerans , a strain long suspected of being a Bacillus subtilis group member based on 16S rRNA similarities (99.8 % with Bacillus mojavensis ). Comparative genomics and DNA–DNA relatedness calculations showed that Brevibacterium halotolerans is synonymous with Bacillus axarquiensis and Bacillus malacitensis . The pairwise in silico DNA–DNA hybridization values calculated in comparisons between the three conspecific strains were all greater than 92 %, which is well above the standard species threshold of 70 %. While the pairwise in silico DNA–DNA hybridization values calculated in comparisons of the three conspecific strains with Bacillus mojavensis were all less than 65 %. The combined results of our genotype and phenotype studies showed that Bacillus axarquiensis, Bacillus malacitensis , and Brevibacterium halotolerans are conspecific and distinct from Bacillus mojavensis . Because the valid publication of the name Bacillus axarquiensis predates the publication of the name Bacillus malacitensis , we propose that Bacillus malacitensis be reclassified as a synonym of Bacillus axarquiensis . In addition, we propose to reclassify Brevibacterium halotolerans as a synonym of Bacillus axarquiensis . An amended description of Bacillus axarquiensis is provided.
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- other bacteria
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Thermosporothrix narukonensis sp. nov., belonging to the class Ktedonobacteria, isolated from fallen leaves on geothermal soil, and emended description of the genus Thermosporothrix
More LessA thermophilic, Gram-stain-positive, spore-forming bacterium that formed branched vegetative and aerial mycelia was isolated from fallen leaves on geothermal soil. This strain, designated F4T, grew at temperatures between 30 and 60 °C; optimum growth temperature was 50 °C, whereas no growth was observed below 28 °C or above 65 °C. The pH range for growth was 4.9–9.5; the pH for optimum growth was 7.0, but no growth was observed at pH below 4.4 or above 10.0. Strain F4T was able to hydrolyse polysaccharides such as cellulose, xylan, chitin and starch. The G+C content in the DNA of strain F4T was 52.5 mol%. The major fatty acid was iso-C17 : 0 and the major menaquinone was MK-9 (H2). The cell wall of strain F4T contained glutamic acid, serine, glycine, alanine and ornithine in a molar ratio of 1.0:1.5:1.4:1.8:0.7. The polar lipids of this strain consisted of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, one unknown phospholipid, three unknown glycolipids and two unknown lipids. The cell-wall sugar was mannose. Detailed phylogenetic analysis based on 16S rRNA gene sequences indicated that strain F4T belongs to the genus Thermosporothrix , and that it was related most closely to Thermosporothrix hazakensis SK20-1T (98.7 % similarity). DNA–DNA hybridization showed relatedness values of less than 15 % with the type strain of Thermosporothrix hazakensis . On the basis of phenotypic features and phylogenetic position, strain F4T is considered to represent a novel species, Thermosporothrix narukonensis sp. nov. The type strain is F4T(=NBRC 111777T=BCCM/LMG 29329T).
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Proposal of Ancylothrix gen. nov., a new genus of Phormidiaceae (Cyanobacteria, Oscillatoriales) based on a polyphasic approach
During a study about the diversity of Phormidioideae (Phormidiaceae, Oscillatoriales) in Brazil, seven strains from southern and southeastern regions were isolated in monospecifc cultures and submitted to polyphasic evaluation (morphological, ecological, cytological and molecular studies). The populations studied were found to be morphologically similar to Kamptonema (filaments narrowed and bent at the end) and cytologically different (thylakoids’ arrangement - radial distribution in Brazilian strains and parietal distribution in Kamptonema). The original habitats were very diverse among the Brazilian strains (freshwater, wet soil and barks of trees). Phylogenetic analysis based on 16S rRNA gene sequences revealed that the strains were placed together in a very distinctive and highly supported clade. Thus, the set of characteristics of the strains resulted in the recognition of the new genus Ancylothrix Martins et Branco gen. nov. with two species [Ancylothrix rivularis gen. nov., sp. nov. (type species) and Ancylothrix terrestris sp. nov.], distinguishable by differences in genetic and ecological characteristics and described under the provisions of the International Code of Nomenclature for algae, fungi and plants. Secondary structures of D1-D1′, box-B and V3 regions were conserved in A. rivularis gen. nov. sp. nov. and more variable in A. terrestris sp. nov.
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Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar)
A pleomorphic, Gram-negative, rod-shaped, indole-, oxidase- and catalase- negative, non-spore-forming, non-motile bacterium was originally isolated in 1992 from moribund, seawater farmed Atlantic salmon with multifocal tissue necrosis. Strain AVG 2115T displayed considerable similarities with Streptobacillus moniliformis , one of the two etiological agents of rat bite fever, and has been stored as Streptobacillus sp. NCIMB 703044T. On the basis of 16S rRNA gene sequence analyses, this strain displayed >99 % sequence similarities with uncultured bacterial clones from the digestive tracts of marine mammals, followed by Sneathia sanguinegens CCUG 41628T (92.7 %), ‘ Sneathia amnii’ Sn35 (92.5 %), Caviibacter abscessus CCUG 39713T (92.2 %), Streptobacillus ratti OGS16T (91.3 %), Streptobacillus notomytis AHL 370-1T (91.2 %), S. moniliformis DSM 12112T (91.0 %), Streptobacillus felis 131000547T (90.9 %) and Streptobacillus hongkongensis DSM 26322T (89.7 %). Sequence similarities to all other taxa were below 89 %. Phylogenetic analysis for strain NCIMB 703044T revealed highly similar results for gyrB, groEL and recA nucleotide and deduced amino acid sequence analyses independent of the employed treeing method. Average nucleotide identities (ANI) for complete genomes ranged from 66.00 % to 72.08 % between strain NCIMB 703044T and the type strains of Sebaldella termitidis, Leptotrichia buccalis, Streptobacillus moniliformis, Sneathia sanguinegens , , , and Caviibacter abscessus . Chemotaxonomic and physiological data of strain NCIMB 703044t were in congruence with closely related members of the family Leptotrichiaceae , represented by highly similar enzyme profiles and fatty acid patterns. MALDI-TOF MS analysis was capable to clearly discriminate strain NCIMB 703044T from all currently described taxa of the family Leptotrichiaceae . On the basis of these data we propose the novel taxon Oceanivirga salmonicida gen. nov. sp. nov. with the type strain AVG 2115T (=NCIMB 703044T) (=DSM 101867T). The G+C content is 25.4 %, genome size is 1.77 Mbp.
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- Proteobacteria
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Proteus cibarius sp. nov., a swarming bacterium from Jeotgal, a traditional Korean fermented seafood, and emended description of the genus Proteus
More LessA novel Proteus -like, Gram-stain-negative, facultatively anaerobic, rod-shaped bacterium, designated strain JS9T, was isolated from Korean fermented seafood, Jeotgal. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain JS9T belonged to the genus Proteus in the family Enterobacteriaceae . The highest 16S rRNA gene sequence similarity of strain JS9T was to Proteus vulgaris KCTC 2579T (98.98 %) and the genomic DNA G+C content is 39.0 mol%. DNA–DNA hybridization values were measured and strain JS9T showed <20.8 % genomic relatedness with closely-related members of the genus Proteus . The isolate showed bacterial motility and swarming activity similar to those of pathogenic Proteus mirabilis but distinct from those of other species of the genus Proteus . The isolate grows optimally at 30 °C, at pH 7, and in the presence of 2 % (w/v) NaCl. The main respiratory quinones are ubiquinone Q-8 and Q-10, and the major cellular fatty acids are C16 : 0, summed feature 3 and summed feature 8. The polar lipids comprise phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified amino lipid, two unidentified amino-phospholipids, and three unidentified lipids. Based on phylogenetic, phenotypic, chemotaxonomic and genotypic analyses, strain JS9T represents a novel species of the genus Proteus , for which the name Proteus cibarius sp. nov. is proposed. The type strain is JS9T (=KACC 18404T=JCM 30699T). An emended description of the genus Proteus is also provided.
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Pseudoroseicyclus aestuarii gen. nov., sp. nov., isolated from a tidal flat
More LessA Gram-stain-negative, non-motile, aerobic and coccoid, ovoid or rod-shaped bacterial strain, designated DB-4T, was isolated from a tidal flat of the Yellow Sea, South Korea. Strain DB-4T grew optimally at 30 °C, at pH 7.0–8.0 and in the presence of approximately 1.0–2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain DB-4T clustered with the type strain of Roseicyclus mahoneyensis , showing sequence similarity of 94.8 %. It exhibited sequence similarity values of 95.6–96.1 % to the type strains of Loktanella soesokkakensis, Loktanella hongkongensis, Loktanella variabilis, Loktanella aestuariicola , , , and Loktanella cinnabarina . Strain DB-4T contained Q-10 as the predominant ubiquinone and C18:1 ω7c and cyclo C19:0 ω8c as the major fatty acids. The major polar lipids of strain DB-4T were phosphatidylcholine, phosphatidylglycerol and one unidentified aminolipid. The fatty acid and polar lipid profiles of strain DB-4T were distinguished from those of the type strains of R. mahoneyensis and some phylogenetically related Loktanella species. The DNA G+C content of strain DB-4T was 69.2 mol%. On the basis of the phylogenetic, chemotaxonomic and other phenotypic properties, strain DB-4T is considered to represent a novel species of a new genus within the family Rhodobacteraceae , for which the name Pseudoroseicyclus aestuarii gen. nov., sp. nov. is proposed. The type strain ofPseudoroseicyclus aestuarii is DB-4T (=KCTC 52038T=CECT 9025T).
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‘Candidatus Tenderia electrophaga', an uncultivated electroautotroph from a biocathode enrichment
Biocathode communities are of interest for a variety of applications, including electrosynthesis, bioremediation, and biosensors, yet much remains to be understood about the biological processes that occur to enable these communities to grow. One major difficulty in understanding these communities is that the critical autotrophic organisms are difficult to cultivate. An uncultivated, electroautotrophic bacterium previously identified as an uncultivated member of the family Chromatiaceae appears to be a key organism in an autotrophic biocathode microbial community. Metagenomic, metaproteomic and metatranscriptomic characterization of this community indicates that there is likely a single organism that utilizes electrons from the cathode to fix CO2, yet this organism has not been obtained in pure culture. Fluorescence in situ hybridization reveals that the organism grows as rod-shaped cells approximately 1.8 × 0.6 µm, and forms large clumps on the cathode. The genomic DNA G+C content was 59.2 mol%. Here we identify the key features of this organism and propose ‘Candidatus Tenderia electrophaga’, within the Gammaproteobacteria on the basis of low nucleotide and predicted protein sequence identity to known members of the orders Chromatiales and Thiotrichales .
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Thalassobaculum fulvum sp. nov., isolated from deep seawater
A novel Gram-stain-negative, rod-shaped (1.0–1.2×2.0–8.0 µm), non-motile without flagella strain, designated HSF7T, was isolated from deep seawater. Strain HSF7T was able to grow at 20–40 °C (optimum 35 °C), pH 5.5–9.0 (optimum pH 6.5) and 0–10 % (w/v) NaCl (optimum 2 %). The G+C content of the genomic DNA was 69 mol%. Bacteriochlorophyll a and poly-β-hydroxybutyrate (PHB) granules were not found. The major fatty acids were C18 : 1ω7c (69.3 %), C16 : 0 (9.1 %) and C19 : 0 cyclo ω8c (6.6 %). The polar lipids were phosphatidylglycerol, three unknown aminophospholipids, an unknown phospholipid, an unknown aminolipid and two unknown lipids. The only isoprenoid quinone was Q-10. 16S rRNA gene sequence analysis revealed that strain HSF7T was most closely related toThalassobaculum salexigens DSM 19539T, Thalassobaculum litoreum DSM 18839T, Nisaeadenitrificans DSM 18348T and Oceanibaculum indicum MCCC 1A02083Twith pairwise sequence similarities of 95.56 %, 95.21 %, 93.64 % and 92.65 %, respectively. On the basis of genotypic, phenotypic, phylogenetic and chemotaxonomic characteristics, strain HSF7T represents a novel species of the genus Thalassobaculum , or which the name Thalassobaculum fulvum sp. nov. is proposed. The type strain is HSF7T(=KCTC 42651T=MCCC 1K01158T).
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Kordiimonas lipolytica sp. nov., isolated from seawater
More LessA Gram-stain-negative, aerobic, rod-shaped bacterium, designated M41T, was isolated from a surface seawater sample collected from the western Pacific Ocean. The isolate grew in medium containing 0.5–10.0 % (w/v) NaCl (optimally at 1.0–3.0 %) at 15–45 °C and pH 5.5–9.5. Positive for oxidase, catalase and nitrate reduction. The respiratory quinone is Q-10. The major fatty acids (>10 %) are iso-C15:0, iso-C17:1ω9c and summed feature 3 (comprising C16:1ω7c and/or iso-C15:0 2-OH). The major polar lipids are phosphatidylethanolamine, one unidentified phospholipid, one unidentified aminolipid, and three unidentified glycolipids.The genomic DNA G+C content is 56.3 mol %. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain M41T should be assigned to the genus Kordiimonas . The 16S rRNA gene sequence similarities between the isolate and the type strains of species of the genus Kordiimonas with validly published names were in the range 96.2– 98.6 %. Strain M41T exhibited average nucleotide identity (ANI) values of 81.7 and 72.3 % with respect to Kordiimonas. lacus S3-22T and Kordiimonas gwangyangensis JCM 12864T, respectively. The genome-to-genome distance analysis revealed that strain M41T shared 51.4 % DNA–DNA relatedness with K. lacus S3-22T and 16.3 % with K. gwangyangensis JCM 12864T. On the basis of phenotypic and genotypic characteristics, strain M41T represents a novel species of the genus Kordiimonas , for which the name Kordiimonas lipolytica sp. nov. is proposed. The type strain is M41T (=CGMCC 1.15304T=JCM 30877T). An emended description of Kordiimonas lacus is also provided.
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Shewanella algicola sp. nov., a marine bacterium isolated from brown algae
More LessA Gram-stain-negative, aerobic, rod-shaped bacterium motile by means of a single polar flagella, strain ST-6T, was isolated from a brown alga (Sargassum thunbergii) collected in Jeju, Republic of Korea. Strain ST-6T was psychrotolerant, growing at 4–30 °C (optimum 20 °C). Phylogenetic analysis based on 16S rRNA and gyrB gene sequences revealed that strain ST-6T belonged to a distinct lineage in the genus Shewanella . Strain ST-6T was related most closely to Shewanella basaltis J83T, S. gaetbuli TF-27T, S. arctica IT12T, S. vesiculosa M7T and S. aestuarii SC18T, showing 96–97 % and 85–70 % 16S rRNA and gyrB gene sequences similarities, respectively. DNA–DNA relatedness values between strain ST-6T and the type strains of two species of the genus Shewanella were <22.6 %. The major cellular fatty acids (>5 %) were summed feature 3 (comprising C16:1ω7c and/ or iso-C15:0 2-OH), C16:0, iso-C13:0 and C17:1ω8c. The DNA G+C content of strain ST-6Twas 42.4 mol%, and the predominant isoprenoid quinones were menaquinone MK-7 and ubiquinones Q-7 and Q-8. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain ST-6T is considered to represent a novel species of the genus Shewanella , for which the name Shewanella algicola sp. nov. is proposed. The type strain is ST-6T (= KCTC 23253T = JCM 31091T).
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Paracoccus cavernae sp. nov., isolated from a show cave
More LessA Gram-stain-negative, aerobic, non-motile, non-spore-forming bacterium, strain 0511ARD5E5T, was isolated from an air sample collected in Ardales Cave (Malaga, Spain). Strain 0511ARD5E5T grew at 4–37 °C and in the presence of 0–4 % (w/v) NaCl [optimally at 25 °C and with 1 % (w/v) NaCl]. Cells were catalase- and oxidase-positive. The major respiratory quinone was ubiquinone-10. The predominant fatty acids were C18:1 ω7c and C16:0. The DNA G+C content was 63.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain 0511ARD5E5T was a member of the genus Paracoccus and was related most closely to Paracoccus aminophilus DSM 8538T and Paracoccus marinus CIP 108500T (96.93 and 96.92 % similarity, respectively). Strain 0511ARD5E5T exhibited DNA–DNA relatedness of 47 % to P. aminophilus DSM 8538T and 31 % to P. marinus CIP 108500T. Chemotaxonomic, phenotypic and phylogenetic analyses indicated that strain 0511ARD5E5T represents a novel species of the genus Paracoccus , for which the name Paracoccus cavernae sp. nov. is proposed. The type strain is 0511ARD5E5T (=LMG 27962T=CECT 8482T).
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Maliponia aquimaris gen. nov., sp. nov., isolated from seawater
More LessA Gram-stain-negative, coccoid- or oval-shaped and non-motile bacterial strain, designated MM-10T, belonging to the Alphaproteobacteria , was isolated from seawater of the Yellow Sea, Korea, and was subjected to a polyphasic taxonomic study. Strain MM-10T grew optimally at pH 7.0–8.0, at 30 °C and in the presence of 2–3 % (w/v) NaCl. Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences showed that strain MM-10T fell within the clade comprising members of the genera Mameliella, Sagittula, Antarctobacter , , and Ponticoccus . Strain MM-10T exhibited a 16S rRNA gene sequence similarity of 97.7 % with respect to the type strain of Mameliella alba . The DNA G+C content of strain MM-10T was 66.0 mol% and its mean level of DNA–DNA relatedness with M. alba LMG 24665T was 12.3±1.4 % . Strain MM-10T contained Q-10 as the predominant ubiquinone and C18 : 1 ω7c as the major fatty acid. The major polar lipids were phosphatidylcholine, phosphatidylglycerol and phosphatidylethanolamine. Differential phenotypic properties, together with phylogenetic distinctiveness, demonstrate that strain MM-10T is distinguishable from recognized species of the genera Mameliella, Sagittula , and Antarctobacter . On the basis of the data presented, strain MM-10T is considered to represent a novel species of a new genus, for which the name Maliponia aquimaris gen. nov., sp. nov. is proposed. The type strain of Maliponia aquimaris is MM-10T (=KCTC 42721T=CECT 8898T).
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Luteimonas arsenica sp. nov., an arsenic-tolerant bacterium isolated from arsenic-contaminated soil
More LessA Gram-stain-negative, rod-shaped bacterium that formed yellow and viscous colonies was isolated from arsenic-contaminated soil of the Jianghan plain, Hubei Province, China, and it was designated 26-35T. This strain was capable of resisting arsenate and arsenite with MICs of 40 and 20 mM, respectively. The 16S rRNA gene of the novel isolate displayed 96.7–94.2 % sequence similarities to those of other known species of the genus Luteimonas . The respiratory quinone was ubiquinone-8 (Q-8). The DNA G+C content was 71.4 mol%. The predominant cellular fatty acids were iso-C15 : 0, iso-C16 : 0, iso-C17 : 0, iso-C11 : 0, iso-C11 : 0 3-OH and iso-C17 : 1 ω9c. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. Phylogenetic and physiological analysis indicated that the isolate represents a novel species of the genus Luteimonas , for which the name Luteimonas arsenica sp. nov. is proposed. The type strain is 26-35T (=KCTC 42824T=CCTCC AB 2014326T).
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Chania multitudinisentens gen. nov., sp. nov., an N-acyl-homoserine-lactone-producing bacterium in the family Enterobacteriaceae isolated from landfill site soil
Phylogenetic and taxonomic characterization was performed for bacterium RB-25T, which was isolated from a soil sample collected in a former municipal landfill site in Puchong, Malaysia. Growth occurred at 20–37 °C at pH 5–8 but not in the presence of 9 % (w/v) NaCl or higher. The principal fatty acids were C16:0, C18:1ω7c and summed feature 3 (C16:1ω7c and/or iso-C15:0 2-OH). Ubiquinone-8 was the only isoprenoid quinone detected. Polar lipid analysis revealed the presence of phospholipid, phosphoaminolipid, phosphatidylethanolamine, phosphatidylglycerol and one unidentified aminolipid. DNA G+C content was 50.9 mol% phylogenetic analysis based on 16S rRNA gene sequence showed that strain RB-25T formed a distinct lineage within the family Enterobacteriaceae of the class Gammaproteobacteria . It exhibited a low level of 16S rRNA gene sequence similarity with its phylogenetic neighbours Pantoea rwandensis LMG 26275T (96.6 %), Rahnella aquatilis CIP 78.65T (96.5 %), Pectobacterium betavasculorum ATCC 43762T (96.4 %), Pantoea rodasii LMG 26273T (96.3 %), Gibbsiella dentisursi NUM 1720T (96.3 %) and Serratia glossinae C1T (96.2 %). Multilocus sequence analyses based on fusA, pyrG, rplB, rpoB and sucA sequences showed a clear distinction of strain RB-25T from the most closely related genera. Isolate RB-25T could also be distinguished from members of these genera by a combination of the DNA G+C content, respiratory quinone system, fatty acid profile, polar lipid composition and other phenotypic features. Strain RB-25T represents a novel species of a new genus, for which the name Chania multitudinisentens gen. nov., sp. nov. is proposed. The type strain is RB-25T (=DSM 28811T=LMG 28304T).
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