Skip to content
1887

Abstract

The present study used whole-genome data to clarify the taxonomic assignment of two closely related species. The genus includes four species with validly published names, and . The type species 002-048 (=IAM 15309=KCTC 13936) was isolated from the soil in Japan, while CL-GR16 (=KCCM 42329=DSM 18252) was isolated from the coastal water off the east coast of Korea. Both strains have similar phenotypic and chemotaxonomic characteristics. Anteiso-C was the major fatty acid, followed by anteiso-C and iso-C. There were similar major menaquinones (MK-7). As determined by whole-genome sequencing, the DNA G+C content of 42.53 and 42.66 mol% was found for and , respectively, and they were 99.86% identical in their 16S rRNA gene sequences (1,421 bp). Genomic comparisons showed the average nucleotide identity was 98.29% and 84.80% for digital DNA–DNA hybridization. These values exceeded the threshold values for bacterial species delineation. Using the Type (Strain) Genome Server, both species were identified as . Phylogenetic analysis based on both 16S rRNA gene sequences and whole-genome sequences showed that they form a separate cluster apart from members of other genera. Based on the combined evidence, Kim . ( 2007;57:1554–1560), Krishnamurthi and Chakrabarti ( 2008;58:2287–2291) is proposed to be a later heterotypic synonym of An . ( 2007;57:51–55).

Funding
This study was supported by the:
  • Gateway Technical College
    • Principal Award Recipient: TheresaHauser
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006794
2025-05-16
2026-02-19

Metrics

Loading full text...

Full text loading...

References

  1. An SY, Asahara M, Goto K, Kasai H, Yokota A. Terribacillus saccharophilus gen. nov., sp. nov. and Terribacillus halophilus sp. nov., spore-forming bacteria isolated from field soil in Japan. Int J Syst Evol Microbiol 2007; 57:51–55 [View Article] [PubMed]
    [Google Scholar]
  2. Kim YG, Hwang CY, Yoo KW, Moon HT, Yoon JH et al. Pelagibacillus goriensis gen. nov., sp. nov., a moderately halotolerant bacterium isolated from coastal water off the east coast of Korea. Int J Syst Evol Microbiol 2007; 57:1554–1560 [View Article] [PubMed]
    [Google Scholar]
  3. Krishnamurthi S, Chakrabarti T. Proposal for transfer of Pelagibacillus goriensis Kim et al. 2007 to the genus Terribacillus as Terribacillus goriensis comb. nov. Int J Syst Evol Microbiol 2008; 58:2287–2291 [View Article] [PubMed]
    [Google Scholar]
  4. Liu W, Jiang L, Guo C, Yang SS. Terribacillus aidingensis sp. nov., a moderately halophilic bacterium. Int J Syst Evol Microbiol 2010; 60:2940–2945 [View Article] [PubMed]
    [Google Scholar]
  5. Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S et al. RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 2015; 5:8365 [View Article]
    [Google Scholar]
  6. Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R et al. The PATRIC bioinformatics resource center: expanding data and analysis capabilities. Nucleic Acids Res 2019; 48:D606–D612 [View Article]
    [Google Scholar]
  7. Auch AF, von Jan M, Klenk H-P, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010; 2:117–134 [View Article] [PubMed]
    [Google Scholar]
  8. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  9. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673–4680 [View Article] [PubMed]
    [Google Scholar]
  10. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article] [PubMed]
    [Google Scholar]
  11. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article] [PubMed]
    [Google Scholar]
  12. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article] [PubMed]
    [Google Scholar]
  13. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article] [PubMed]
    [Google Scholar]
  14. Konstantinidis KT, Tiedje JM. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol 2007; 10:504–509 [View Article] [PubMed]
    [Google Scholar]
  15. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article]
    [Google Scholar]
  16. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:155
    [Google Scholar]
  17. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  18. Parker CT, Tindall BJ, Garrity GM. International code of nomenclature of prokaryotes. Int J Syst Evol Microbiol 2015; 69:S1–S111
    [Google Scholar]
/content/journal/ijsem/10.1099/ijsem.0.006794
Loading
/content/journal/ijsem/10.1099/ijsem.0.006794
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An error occurred
Approval was partially successful, following selected items could not be processed due to error