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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo International Journal of Systematic and Evolutionary Microbiology

Volume 75, Issue 3

sp. nov., a novel marine bacterium isolated from the soft coral sp. at Oceanário de Lisboa in Portugal Open Access

Abstract

This study describes a Gram-stain-negative, rod-shaped, facultatively anaerobic bacterial species isolated from the octocoral sp. inhabiting the live coral aquarium at Oceanário de Lisboa in Portugal. Four strains, NE35, NE40, NE41 and NE43, were classified into the genus by means of 16S rRNA gene and whole-genome sequence homologies. We then performed phylogenetic, phylogenomic and biochemical analyses to examine their novel species status within the genus, based on comparisons with the designated novel type strain NE40. The closest 16S rRNA gene relatives to strain NE40 are CL-33 (98.2%), EF212 (97.6%) and PS125 (97.2%). The four strains show genome-wide average nucleotide identity scores above the species level cut-off (95%) with one another and below the cut-off with all type strains with publicly available genomes. Digital DNA–DNA hybridization further supported the classification of the strains as a novel species, showing values below 70% when compared with other type strains. The DNA G+C content of NE40 was 49.0 mol%, and its genome size was 5.45 Mb. Strain NE40 grows from 15 to 37 °C, with 1–5% (w/v) NaCl, and between pH 6.0 and 8.0 in marine broth and shows optimal growth at 28–32 °C, 2–3% NaCl and pH 7.0–8.0. The predominant cellular fatty acids are summed feature 3 (C ω6 and/or C ω7), summed feature 8 (C ω6 and/or C ω7), C and C. Strain NE40 presents oxidase, catalase and -galactosidase activities and can reduce nitrates to nitrites and degrade cellulose, chitin, agarose and xylan. Based on the polyphasic approach employed in this study, we propose the novel species name sp. nov. (type strain NE40=DSM 118084=UCCCB 212).

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): aquarium , Endozoicomonadaceae , host–microbe interactions , Oceanospirillales , octocorals and symbiosis
Funding
This study was supported by the:
  • Fundação para a Ciência e a Tecnologia (Award 10.54499/SFRH/BD/151376/2021)
    • Principal Award Recipient: MatildeMarques
  • Fundação para a Ciência e a Tecnologia (Award PRT/BD/153503/2021)
    • Principal Award Recipient: JoanaF. Couceiro
  • Fundação para a Ciência e a Tecnologia (Award CEECIND/00788/2017)
    • Principal Award Recipient: TinaKeller-Costa
  • “BLUE BIOECONOMY PACT” (Project Nº. C644915664-00000026), co-funded by Next Generation EU European Fund, under the incentive line “Agendas for Business Innovation” within Component Funding Scheme 5 - Capitalization and Business Innovation of the Portuguese Recovery and Resilience Plan (RRP) (Award C644915664-00000026)
    • Principal Award Recipient: DanielaM. G. da Silva
  • Fundação para a Ciência e a Tecnologia (Award UIDB/04565/2020; UIDP/04565/2020; LA/P/0140/2020)
    • Principal Award Recipient: NotApplicable
  • “BLUE BIOECONOMY PACT” (Project Nº. C644915664-00000026), co-funded by Next Generation EU European Fund, under the incentive line “Agendas for Business Innovation” within Component Funding Scheme 5 - Capitalization and Business Innovation of the Portuguese Recovery and Resilience Plan (RRP) (Award C644915664-00000026)
    • Principal Award Recipient: RodrigoCosta
© 2025 The Authors
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License.
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2025-03-05
2026-01-24

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Endozoicomonas lisbonensis sp. nov., a novel marine bacterium isolated from the soft coral Litophyton sp. at Oceanário de Lisboa in Portugal
Int J Syst Evol Microbiol 75, 006696 (2025); https://doi.org/10.1099/ijsem.0.006696
/content/journal/ijsem/10.1099/ijsem.0.006696
/content/journal/ijsem/10.1099/ijsem.0.006696
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