Skip to content
1887

Abstract

The order , belonging to class , is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the (Validation List no. 215) and 12 novel families for which we propose the names , , , , , , , , , , and . This work represents a genomic sequence-based and systematic framework for classifying the order at the family level, providing new insights into its evolution.

Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award 31970003)
    • Principal Award Recipient: ZhengJinshui
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006539
2024-11-18
2025-12-04

Metrics

Loading full text...

Full text loading...

References

  1. Mandic-Mulec I, Stefanic P, van Elsas JD. Ecology of Bacillaceae. Microbiol Spectr 2015; 3:TBS–0017 [View Article] [PubMed]
    [Google Scholar]
  2. Harirchi S, Sar T, Ramezani M, Aliyu H, Etemadifar Z et al. Bacillales: from taxonomy to biotechnological and industrial perspectives. Microorganisms 2022; 10:1–46 [View Article] [PubMed]
    [Google Scholar]
  3. Ludwig W, Schleifer K, Whitman WB. Revised road map to the phylum firmicutes. Bergey’s Man Syst Archaea Bact 20091–16 [View Article]
    [Google Scholar]
  4. Tindall BJ. When treated as heterotypic synonyms the names Caryophanaceae Peshkoff 1939 (approved lists 1980) and Caryophanales Peshkoff 1939 (approved lists 1980) have priority over the names Planococcaceae Krasil’nikov 1949 (approved lists 1980) and Bacillales Prévot 1953 (approved lists 1980), respectively. Int J Syst Evol Microbiol 2019; 69:2187–2195 [View Article] [PubMed]
    [Google Scholar]
  5. Větrovský T, Baldrian P. The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses. PLoS One 2013; 8:e57923 Epub ahead of print 2013 [View Article] [PubMed]
    [Google Scholar]
  6. Janda JM, Abbott SL. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol 2007; 45:2761–2764 [View Article] [PubMed]
    [Google Scholar]
  7. Patel S, Gupta RS. A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. Int J Syst Evol Microbiol 2020; 70:406–438 [View Article]
    [Google Scholar]
  8. Gupta RS, Patel S, Saini N, Chen S. Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species. Int J Syst Evol Microbiol 2020; 70:5753–5798 [View Article] [PubMed]
    [Google Scholar]
  9. Chuvochina M, Mussig AJ, Chaumeil P-A, Skarshewski A, Rinke C et al. Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiol Lett 2023; 370:1–33 [View Article] [PubMed]
    [Google Scholar]
  10. Oren A, Göker M. Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM. Int J Syst Evol Microbiol 2024; 74:1–11 [View Article]
    [Google Scholar]
  11. Riesco R, Trujillo ME. Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2024; 74:006300 [View Article] [PubMed]
    [Google Scholar]
  12. Whitman WB. Genome sequences as the type material for taxonomic descriptions of prokaryotes. Syst Appl Microbiol 2015; 38:217–222 [View Article] [PubMed]
    [Google Scholar]
  13. Konstantinidis KT, Tiedje JM. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol 2007; 10:504–509 [View Article] [PubMed]
    [Google Scholar]
  14. Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F et al. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun 2019; 10:5477 Epub ahead of print 2019 [View Article] [PubMed]
    [Google Scholar]
  15. Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 2015; 25:1043–1055 [View Article] [PubMed]
    [Google Scholar]
  16. Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 2014; 30:2068–2069 [View Article] [PubMed]
    [Google Scholar]
  17. Hyatt D, Chen G-L, Locascio PF, Land ML, Larimer FW et al. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 2010; 11:119 [View Article] [PubMed]
    [Google Scholar]
  18. Lechner M, Findeiß S, Steiner L, Marz M, Stadler PF et al. Proteinortho: detection of (Co-)orthologs in large-scale analysis. BMC Bioinformatics 2011; 12: [View Article]
    [Google Scholar]
  19. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792–1797 [View Article] [PubMed]
    [Google Scholar]
  20. Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 2009; 25:1972–1973 [View Article] [PubMed]
    [Google Scholar]
  21. Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD et al. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol 2020; 37:1530–1534 [View Article] [PubMed]
    [Google Scholar]
  22. Letunic I, Bork P. Interactive tree of life (iTOL) v4: recent updates and new developments. Nucleic Acids Res 2019; 47:W256–W259 [View Article] [PubMed]
    [Google Scholar]
  23. Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A et al. A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nat Biotechnol 2018; 36:996–1004 [View Article] [PubMed]
    [Google Scholar]
  24. Price MN, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One 2010; 5:e9490 [View Article] [PubMed]
    [Google Scholar]
  25. Stamatakis A. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014; 30:1312–1313 [View Article] [PubMed]
    [Google Scholar]
  26. Qin Q-L, Xie B-B, Zhang X-Y, Chen X-L, Zhou B-C et al. A proposed genus boundary for the prokaryotes based on genomic insights. J Bacteriol 2014; 196:2210–2215 [View Article] [PubMed]
    [Google Scholar]
  27. Conway JR, Lex A, Gehlenborg N. UpSetR: an R package for the visualization of intersecting sets and their properties. Bioinformatics 2017; 33:2938–2940 [View Article]
    [Google Scholar]
  28. Maayer PD, Aliyu H, Cowan DA. Reorganising the order Bacillales through phylogenomics. Syst Appl Microbiol 2019; 42:178–189 [View Article] [PubMed]
    [Google Scholar]
  29. Bello S, Mudassir SH, Rudra B, Gupta RS. Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov. Antonie van Leeuwenhoek 2023; 116:937–973 [View Article]
    [Google Scholar]
  30. Jiang Z, Xiao M, Yang LL, Zhi XY, Li WJ. Genome-based taxonomic classification within the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 2019; 69:2028–2036 [View Article] [PubMed]
    [Google Scholar]
  31. Liao H, Lin X, Li Y, Qu M, Tian Y. Reclassification of the taxonomic framework of orders Cellvibrionales, Oceanospirillales, Pseudomonadales, and Alteromonadales in class Gammaproteobacteria through phylogenomic tree analysis. mSystems 2020; 5:e00543-20 [View Article] [PubMed]
    [Google Scholar]
  32. Salam N, Jiao JY, Zhang XT, Li WJ. Update on the classification of higher ranks in the phylum Actinobacteria. Int J Syst Evol Microbiol 2020; 70:1331–1355 [View Article] [PubMed]
    [Google Scholar]
  33. Parker CT, Tindall BJ, Garrity GM. International code of nomenclature of prokaryotes. Int J Syst Evol Microbiol 2019; 69:S1–S111 [View Article]
    [Google Scholar]
  34. Jiang Z, Yuan C-G, Xiao M, Tian X-P, Khan I-U et al. Abyssicoccus albus gen. nov., sp. nov., a novel member of the family Staphylococcaceae isolated from marine sediment of the Indian Ocean. Antonie van Leeuwenhoek 2016; 109:1153–1160 [View Article]
    [Google Scholar]
  35. Miñana-Galbis D, Pinzón DL, Lorén JG, Manresa À, Oliart-Ros RM. Reclassification of Geobacillus pallidus (Scholz et al. 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov. Int J Syst Evol Microbiol 2010; 60:1600–1604 [View Article] [PubMed]
    [Google Scholar]
  36. Bae SS, Lee JH, Kim SJ. Bacillus alveayuensis sp. nov., a thermophilic bacterium isolated from deep-sea sediments of the Ayu Trough. Int J Syst Evol Microbiol 2005; 55:1211–1215 [View Article] [PubMed]
    [Google Scholar]
  37. Sun Q-L, Yu C, Luan Z-D, Lian C, Hu Y-H et al. Description of Bacillus kexueae sp. nov. and Bacillus manusensis sp. nov., isolated from hydrothermal sediments. Int J Syst Evol Microbiol 2018; 68:829–834 [View Article] [PubMed]
    [Google Scholar]
  38. da Costa MR. Family II. Alicyclobacillaceae fam. nov. In De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W et al. eds Bergey’s Manual of Systematic Bacteriology New York: Springer-Verlag; 2009 p 229
    [Google Scholar]
  39. Wisotzkey JD, Jurtshuk P, Fox GE, Deinhard G, Poralla K. Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 1992; 42:263–269 [View Article] [PubMed]
    [Google Scholar]
  40. Niimura Y, Komagata K, Kozaki M. Anaerobic sporeforming xylan-digesting bacterium which lacks cytochrome, quinone, and catalase. Int J Syst Bacteriol 1990; 5:297–301 [View Article]
    [Google Scholar]
  41. Jeon CO, Lim J-M, Lee J-M, Xu L-H, Jiang C-L et al. Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 2005; 55:1891–1896 [View Article] [PubMed]
    [Google Scholar]
  42. Schmidt M, Priemé A, Johansen A, Stougaard P. Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland. Extremophiles 2012; 16: [View Article] [PubMed]
    [Google Scholar]
  43. Sheu SY, Arun AB, Jiang SR, Young CC, Chen WM. Allobacillus halotolerans gen. nov., sp. nov. isolated from shrimp paste. Int J Syst Evol Microbiol 2011; 61:1023–1027 [View Article]
    [Google Scholar]
  44. Amoozegar MA, Bagheri M, Didari M, Mehrshad M, Schumann P et al. Aquibacillus halophilus gen. nov., sp. nov., A moderately halophilic bacterium from A hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov. Int J Syst Evol Microbiol 2014; 64:3616–3623 [View Article]
    [Google Scholar]
  45. Márquez MC, Carrasco IJ, Xue Y, Ma Y, Cowan DA et al. Aquisalibacillus elongatus gen. nov., sp. nov., a moderately halophilic bacterium of the family Bacillaceae isolated from a saline lake. Int J Syst Evol Microbiol 2008; 58:1922–1926 [View Article] [PubMed]
    [Google Scholar]
  46. Nakamura K, Haruta S, Ueno S, Ishii M, Yokota A et al. Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. Int J Syst Evol Microbiol 2004; 54:1063–1069 [View Article]
    [Google Scholar]
  47. Yu Z, Wen J, Yang G, Liu J, Zhou S. Compostibacillus humi gen. nov., sp. nov., a member of the family Bacillaceae, isolated from sludge compost. Int J Syst Evol Microbiol 2015; 65:346–352 [View Article] [PubMed]
    [Google Scholar]
  48. Schlesner H, Lawson PA, Collins MD, Weiss N, Wehmeyer U et al. Filobacillus milensis gen. nov., sp. nov., a new halophilic spore-forming bacterium with Orn-D-Glu-type peptidoglycan. Int J Syst Evol Microbiol 2001; 51:425–431 [View Article] [PubMed]
    [Google Scholar]
  49. Wainø M, Tindall BJ, Schumann P, Ingvorsen K. Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 1999; 49:821–831 [View Article] [PubMed]
    [Google Scholar]
  50. Echigo A, Fukushima T, Mizuki T, Kamekura M, Usami R. Halalkalibacillus halophilus gen. nov., sp. nov., a novel moderately halophilic and alkaliphilic bacterium isolated from a non-saline soil sample in Japan. Int J Syst Evol Microbiol 2007; 57:1081–1085 [View Article] [PubMed]
    [Google Scholar]
  51. Spring S, Ludwig W, Marquez MC, Ventosa A, Schleifer KH. Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 1996; 46:492–496
    [Google Scholar]
  52. Ishikawa M, Nakajima K, Itamiya Y, Furukawa S, Yamamoto Y et al. Halolactibacillus halophilus gen. nov., sp. nov. and Halolactibacillus miurensis sp. nov., halophilic and alkaliphilic marine lactic acid bacteria constituting a phylogenetic lineage in Bacillus rRNA group 1. Int J Syst Evol Microbiol 2005; 55:2427–2439 [View Article] [PubMed]
    [Google Scholar]
  53. Yoon J-H, Kang KH, Park Y-H. Lentibacillus salicampi gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt field in Korea. Int J Syst Evol Microbiol 2002; 52:2043–2048 [View Article] [PubMed]
    [Google Scholar]
  54. Addou NA, Schumann P, Spröer C, Ben Hania W, Hacene H et al. Melghiribacillus thermohalophilus gen. nov., sp. nov., a novel filamentous, endospore-forming, thermophilic and halophilic bacterium. Int J Syst Evol Microbiol 2015; 65:1172–1179 [View Article]
    [Google Scholar]
  55. Sorokin ID, Zadorina EV, Kravchenko IK, Boulygina ES, Tourova TP et al. Natronobacillus azotifigens gen. nov., sp. nov., an anaerobic diazotrophic haloalkaliphile from soda-rich habitats. Extremophiles 2008; 12:819–827 [View Article] [PubMed]
    [Google Scholar]
  56. Lu J, Nogi Y, Takami H. Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol Lett 2001; 205:291–297 [View Article] [PubMed]
    [Google Scholar]
  57. Mayr R, Busse HJ, Worliczek HL, Ehling-Schulz M, Scherer S. Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov. Int J Syst Evol Microbiol 2006; 56:1383–1389 [View Article] [PubMed]
    [Google Scholar]
  58. Ishikawa M, Ishizaki S, Yamamoto Y, Yamasato K. Paraliobacillus ryukyuensis gen. nov., sp. nov., a new Gram-positive, slightly halophilic, extremely halotolerant, facultative anaerobe isolated from a decomposing marine alga. J Gen Appl Microbiol 2002; 48:269–279 [View Article] [PubMed]
    [Google Scholar]
  59. Nunes I, Tiago I, Pires AL, da Costa MS, Veríssimo A. Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bacterium isolated from potting soil. Int J Syst Evol Microbiol 2006; 56:1841–1845 [View Article] [PubMed]
    [Google Scholar]
  60. Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR. Pelagirhabdus alkalitolerans gen. nov., sp. nov., an alkali-tolerant and thermotolerant bacterium isolated from beach sediment, and reclassification of Amphibacillus fermentum as Pelagirhabdus fermentum comb. nov. Int J Syst Evol Microbiol 2016; 66:84–90 [View Article]
    [Google Scholar]
  61. Tanasupawat S, Namwong S, Kudo T, Itoh T. Piscibacillus salipiscarius gen. nov., sp. nov., a moderately halophilic bacterium from fermented fish (pla-ra) in Thailand. Int J Syst Evol Microbiol 2007; 57:1413–1417 [View Article]
    [Google Scholar]
  62. Lim JM, Jeon CO, Song SM, Kim CJ. Pontibacillus chungwhensis gen. nov., sp. nov., a moderately halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 2005; 55:165–170 [View Article] [PubMed]
    [Google Scholar]
  63. Glaeser SP, McInroy JA, Busse H-J, Kämpfer P. Pseudogracilibacillus auburnensis gen. nov., sp. nov., isolated from the rhizosphere of Zea mays. Int J Syst Evol Microbiol 2014; 64:2442–2448 [View Article]
    [Google Scholar]
  64. Li J, Zhang B, Liu G, Liu Y, Yang H et al. Radiobacillus deserti gen. nov., sp. nov., a UV-resistant bacterium isolated from desert soil. Int J Syst Evol Microbiol 2020; 70:6338–6347 [View Article]
    [Google Scholar]
  65. Yoon JH, Kang SJ, Oh TK. Reclassification of Marinococcus albus Hao et al. 1985 as Salimicrobium album gen. nov., comb. nov. and Bacillus halophilus Ventosa et al. 1990 as Salimicrobium halophilum comb. nov., and description of Salimicrobium luteum sp. nov. Int J Syst Evol Microbiol 1985; 57:2406–2411
    [Google Scholar]
  66. Ren PG, Zhou PJ. Salinibacillus aidingensis gen. nov., sp. nov. and Salinibacillus kushneri sp. nov., moderately halophilic bacteria isolated from a neutral saline lake in Xin-Jiang, China. Int J Syst Evol Microbiol 2005; 55:949–953 [View Article] [PubMed]
    [Google Scholar]
  67. Albuquerque L, Tiago I, Rainey FA, Taborda M, Nobre MF et al. Salirhabdus euzebyi gen. nov., sp. nov., a Gram-positive, halotolerant bacterium isolated from a sea salt evaporation pond. Int J Syst Evol Microbiol 2007; 57:1566–1571 [View Article]
    [Google Scholar]
  68. Amoozegar MA, Bagheri M, Didari M, Shahzedeh Fazeli SA, Schumann P et al. Saliterribacillus persicus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a hypersaline lake. Int J Syst Evol Microbiol 2013; 63:345–351 [View Article]
    [Google Scholar]
  69. Carrasco IJ, Márquez MC, Xue Y, Ma Y, Cowan DA et al. Sediminibacillus halophilus gen. nov., sp. nov., a moderately halophilic, Gram-positive bacterium from a hypersaline lake. Int J Syst Evol Microbiol 2008; 58:1961–1967 [View Article] [PubMed]
    [Google Scholar]
  70. Yang G, Zhou S. Sinibacillus soli gen. nov., sp. nov., a moderately thermotolerant member of the family Bacillaceae. Int J Syst Evol Microbiol 2014; 64:1647–1653 [View Article] [PubMed]
    [Google Scholar]
  71. Wang X, Xue Y, Ma Y. Streptohalobacillus salinus gen. nov., sp. nov., a moderately halophilic, Gram-positive, facultative anaerobe isolated from subsurface saline soil. Int J Syst Evol Microbiol 2011; 61:1127–1132 [View Article] [PubMed]
    [Google Scholar]
  72. Ren PG, Zhou PJ. Tenuibacillus multivorans gen. nov., sp. nov., a moderately halophilic bacterium isolated from saline soil in Xin-Jiang, China. Int J Syst Evol Microbiol 2005; 55:95–99 [View Article] [PubMed]
    [Google Scholar]
  73. An SY, Asahara M, Goto K, Kasai H, Yokota A. Terribacillus saccharophilus gen. nov., sp. nov. and Terribacillus halophilus sp. nov., spore-forming bacteria isolated from field soil in Japan. Int J Syst Evol Microbiol 2007; 57:51–55 [View Article] [PubMed]
    [Google Scholar]
  74. García MT, Gallego V, Ventosa A, Mellado E. Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. Int J Syst Evol Microbiol 2005; 55:1789–1795 [View Article]
    [Google Scholar]
  75. Heyndrickx M, Lebbe L, Kersters K, De Vos P, Forsyth G et al. Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int J Syst Evol Microbiol 1998; 48:99–106 [View Article]
    [Google Scholar]
  76. Zavarzina DG, Tourova TP, Kolganova TV, Boulygina ES, Zhilina TN. Description of Anaerobacillus alkalilacustre gen. nov., sp. nov.—Strictly anaerobic diazotrophic bacillus isolated from soda lake and transfer of Bacillus arseniciselenatis, Bacillus macyae, and Bacillus alkalidiazotrophicus to Anaerobacillus as the new combinations A. arseniciselenatis comb. nov., A. macyae comb. nov., and A. alkalidiazotrophicus comb. nov. Microbiology 2009; 78:723–731 [View Article]
    [Google Scholar]
  77. Joshi A, Thite S, Karodi P, Joseph N, Lodha T. Alkalihalobacterium elongatum gen. nov. sp. nov.: an antibiotic-producing bacterium isolated from lonar lake and reclassification of the genus Alkalihalobacillus into seven novel genera. Front Microbiol 2021; 12:722369 [View Article] [PubMed]
    [Google Scholar]
  78. Bhatt HB, Azmatunnisa Begum M, Chintalapati S, Chintalapati VR, Singh SP. Desertibacillus haloalkaliphilus gen. nov., sp. nov., isolated from a saline desert. Int J Syst Evol Microbiol 2017; 67:4435–4442 [View Article]
    [Google Scholar]
  79. Hirota K, Aino K, Yumoto I. Fermentibacillus polygoni gen. nov., sp. nov., an alkaliphile that reduces indigo dye. Int J Syst Evol Microbiol 2016; 66:2247–2253 [View Article] [PubMed]
    [Google Scholar]
  80. Hirota K, Nishita M, Matsuyama H, Yumoto I. Paralkalibacillus indicireducens gen., nov., sp. nov., an indigo-reducing obligate alkaliphile isolated from indigo fermentation liquor used for dyeing. Int J Syst Evol Microbiol 2017; 67:4050–4056 [View Article] [PubMed]
    [Google Scholar]
  81. Hirota K, Okamoto T, Matsuyama H, Yumoto I. Polygonibacillus indicireducens gen. nov., sp. nov., an indigo-reducing and obligate alkaliphile isolated from indigo fermentation liquor for dyeing. Int J Syst Evol Microbiol 2016; 66:4650–4656 [View Article] [PubMed]
    [Google Scholar]
  82. Liu G-H, Narsing Rao MP, Wang X-Y, Chu T-W, Liu B et al. Bacillus alkalicellulosilyticus sp. nov., isolated from extremely alkaline bauxite residue (red mud) site. Arch Microbiol 2021; 203:719–723 [View Article]
    [Google Scholar]
  83. Lei R-F, Ma Q, Li Y-Q, Abudourousuli D, Wang S et al. Bacillus suaedae sp. nov., isolated from the stem of Suaeda aralocaspica in north-west China. Int J Syst Evol Microbiol 2022; 72: [View Article]
    [Google Scholar]
  84. Pikuta E, Lysenko A, Chuvilskaya N, Mendrock U, Hippe H et al. Anoxybacillus pushchinensis gen. nov., sp. nov., a novel anaerobic, alkaliphilic, moderately thermophilic bacterium from manure, and description of Anoxybacillus flavitherms comb. nov. Int J Syst Evol Microbiol 2000; 50 Pt 6:2109–2117 [View Article] [PubMed]
    [Google Scholar]
  85. Nazina TN, Tourova TP, Poltaraus AB, Novikova EV, Grigoryan AA et al. Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. th. Int J Syst Evol Microbiol 2001; 51:433–446 [View Article] [PubMed]
    [Google Scholar]
  86. Aliyu H, Lebre P, Blom J, Cowan D, De Maayer P. Corrigendum to “Phylogenomic re-assessment of the thermophilic genus Geobacillus” [Syst. Appl. Microbiol. 39 (2016) 527–533]. Syst Appl Microbiol 2018; 41:529–530 [View Article] [PubMed]
    [Google Scholar]
  87. Nystrand R. Saccharococcus thermophilus gen. nov., sp. nov. isolated from beet sugar extraction. Syst Appl Microbiol 1984; 5:204–219 [View Article]
    [Google Scholar]
  88. Cihan AC, Koc M, Ozcan B, Tekin N, Cokmus C. Thermolongibacillus altinsuensis gen. nov., sp. nov. and Thermolongibacillus kozakliensis sp. nov., aerobic, thermophilic, long bacilli isolated from hot springs. Int J Syst Evol Microbiol 2014; 64:187–197 [View Article] [PubMed]
    [Google Scholar]
  89. Kosowski K, Schmidt M, Pukall R, Hause G, Kämpfer P et al. Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor. Int J Syst Evol Microbiol 2014; 64:88–94 [View Article] [PubMed]
    [Google Scholar]
  90. Liu Y, Liang J, Zhang Z, Yu M, Wang M et al. Aureibacillus halotolerans gen. nov., sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2015; 65:3950–3958 [View Article]
    [Google Scholar]
  91. Mahmoud H, Eapen S, Al-Bajjali F, Al-Qattan A, Jose L. Litoribacterium kuwaitense gen. nov., sp. nov., isolated from a Kuwait tidal flat. Int J Syst Evol Microbiol 2021; 71:004792 [View Article] [PubMed]
    [Google Scholar]
  92. Cohn F. Untersuchungen über Bakterien. In Beiträge Zur Biologie Der Pflanzen Breslau: Max Müller; 1872 pp 127–224
    [Google Scholar]
  93. Xue Y, Zhang X, Zhou C, Zhao Y, Cowan DA et al. Caldalkalibacillus thermarum gen. nov., sp. nov., a novel alkalithermophilic bacterium from a hot spring in China. Int J Syst Evol Microbiol 2006; 56:1217–1221 [View Article]
    [Google Scholar]
  94. Zhao W, Zhang CL, Romanek CS, Wiegel J. Description of Caldalkalibacillus uzonensis sp. nov. and emended description of the genus Caldalkalibacillus. Int J Syst Evol Microbiol 2008; 58:1106–1108 [View Article] [PubMed]
    [Google Scholar]
  95. Unit MS, England L. First draft approved lists of bacterial names. Int J Syst Bacteriol 1976; 26:563–599 [View Article]
    [Google Scholar]
  96. Yumoto I, Yamazaki K, Sawabe T, Nakano K, Kawasaki K et al. Bacillus horti sp. nov., a new gram-negative alkaliphilic bacillus. Int J Syst Bacteriol 1998; 48 Pt 2:565–571 [View Article] [PubMed]
    [Google Scholar]
  97. Coorevits A, Dinsdale AE, Halket G, Lebbe L, De Vos P et al. Taxonomic revision of the genus Geobacillus: emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp. nov. Int J Syst Evol Microbiol 2012; 62:1470–1485 [View Article] [PubMed]
    [Google Scholar]
  98. Moriya T, Hikota T, Yumoto I, Ito T, Terui Y et al. Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost. Int J Syst Evol Microbiol 2011; 61:631–636 [View Article] [PubMed]
    [Google Scholar]
  99. Gupta RS, Patel S. Robust demarcation of the family Caryophanaceae (Planococcaceae) and its different genera including three novel genera based on phylogenomics and highly specific molecular signatures. Front Microbiol 2019; 10:2821 Epub ahead of print 2020 [View Article] [PubMed]
    [Google Scholar]
  100. Peshkoff MA. Cytology, karyology and cycle of development of new microbes, Caryophanon latum and Caryophanon tenue. Dokl Akad Nauk SSSR 1939; 25:239–342
    [Google Scholar]
  101. Manorama R, Pindi PK, Reddy GSN, Shivaji S. Bhargavaea cecembensis gen. nov., sp. nov., isolated from the Chagos-Laccadive ridge system in the Indian Ocean. Int J Syst Evol Microbiol 2009; 59:2618–2623 [View Article] [PubMed]
    [Google Scholar]
  102. Arora PK, Chauhan A, Pant B, Korpole S, Mayilraj S et al. Chryseomicrobium imtechense gen. nov., sp. nov., a new member of the family Planococcaceae. Int J Syst Evol Microbiol 2011; 61:1859–1864 [View Article] [PubMed]
    [Google Scholar]
  103. Kim W, Traiwan J, Park M-H, Jung MY, Oh S-J et al. Chungangia koreensis gen. nov., sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2012; 62:1914–1920 [View Article]
    [Google Scholar]
  104. Pal Y, Mayilraj S, Paul M, Schumann P, Krishnamurthi S. Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site. Int J Syst Evol Microbiol 2019; 69:2555–2564 [View Article] [PubMed]
    [Google Scholar]
  105. Trevisan V. Carratteri di alcuni nuovi generi di Batteriacee. Atti Della Accad Fis Milano 1885; 3:92–107
    [Google Scholar]
  106. Ahmed I, Yokota A, Yamazoe A, Fujiwara T. Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int J Syst Evol Microbiol 2007; 57:1117–1125 [View Article] [PubMed]
    [Google Scholar]
  107. Krishnamurthi S, Bhattacharya A, Mayilraj S, Saha P, Schumann P et al. Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. Int J Syst Evol Microbiol 2009; 59:1364–1370 [View Article] [PubMed]
    [Google Scholar]
  108. Migula W. Über ein neues System der Bakterien. Arb aus dem Bakteriol Inst der Tech Hochschule zu Karlsruhe 1894; 1:235–238
    [Google Scholar]
  109. Krishnamurthi S, Ruckmani A, Pukall R, Chakrabarti T. Psychrobacillus gen. nov. and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov. and Psychrobacillus psychrodurans comb. nov. Syst Appl Microbiol 2010; 33:367–373 [View Article]
    [Google Scholar]
  110. Vaishampayan P, Miyashita M, Ohnishi A, Satomi M, Rooney A et al. Description of Rummeliibacillus stabekisii gen. nov., sp. nov. and reclassification of Bacillus pycnus Nakamura et al. 2002 as Rummeliibacillus pycnus comb. nov. Int J Syst Evol Microbiol 2009; 59:1094–1099 [View Article]
    [Google Scholar]
  111. Whitehead TR, Johnson CN, Patel NB, Cotta MA, Moore ERB et al. Savagea faecisuis gen. nov., sp. nov., a tylosin- and tetracycline-resistant bacterium isolated from a swine-manure storage pit. Antonie van Leeuwenhoek 2015; 108:151–161 [View Article]
    [Google Scholar]
  112. Krishnamurthi S, Chakrabarti T, Stackebrandt E. Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to Solibacillus gen. nov. as Solibacillus silvestris comb. nov. Int J Syst Evol Microbiol 2009; 59:1054–1058 [View Article] [PubMed]
    [Google Scholar]
  113. Kluyver AJ, van Niel CB. Prospects for a natural system of classification of bacteria. Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene. Abteilung II 1939; 94:369–403
    [Google Scholar]
  114. Grazia Fortina M, Pukall R, Schumann P, Mora D, Parini C et al. Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov. Int J Syst Evol Microbiol 1995; 51:447–455
    [Google Scholar]
  115. Albert RA, Archambault J, Lempa M, Hurst B, Richardson C et al. Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. Int J Syst Evol Microbiol 2007; 57:2729–2737 [View Article] [PubMed]
    [Google Scholar]
  116. Hayat R, Ahmed I, Paek J, Sin Y, Ehsan M et al. Lysinibacillus composti sp. nov., isolated from compost. Ann Microbiol 2014; 64:1081–1088 [View Article]
    [Google Scholar]
  117. Yu J, Guan X, Liu C, Xiang W, Yu Z et al. Lysinibacillus endophyticus sp. nov., an indole-3-acetic acid producing endophytic bacterium isolated from corn root (Zea mays cv. Xinken-5). Antonie van Leeuwenhoek 2016; 109:1337–1344 [View Article]
    [Google Scholar]
  118. Yu L, Tang X, Wei S, Qiu Y, Xu X et al. Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean. J Microbiol 2019; 57:562–568 [View Article] [PubMed]
    [Google Scholar]
  119. Kämpfer P, Glaeser SP, Busse H-J, McInroy JA, Clermont D et al. Pseudoneobacillus rhizosphaerae gen. nov., sp. nov., isolated from maize root rhizosphere. Int J Syst Evol Microbiol 2022; 72: Epub ahead of print 2022 [View Article]
    [Google Scholar]
  120. Sorokin DY, Tourova TP, Sukhacheva MV, Muyzer G. Desulfuribacillus alkaliarsenatis gen. nov. sp. nov., a deep-lineage, obligately anaerobic, dissimilatory sulfur and arsenate-reducing, haloalkaliphilic representative of the order Bacillales from soda lakes. Extremophiles 2012; 16:597–605 [View Article]
    [Google Scholar]
  121. Seiler H, Wenning M, Scherer S. Domibacillus robiginosus gen. nov., sp. nov., isolated from a pharmaceutical clean room. Int J Syst Evol Microbiol 2013; 63:2054–2061 [View Article]
    [Google Scholar]
  122. Narsing Rao MP, Banerjee A, Liu G-H, Thamchaipenet A. Genome-based reclassification of Bacillus acidicola, Bacillus pervagus and the genera Heyndrickxia, Margalitia and Weizmannia. Int J Syst Evol Microbiol 2023; 73: [View Article]
    [Google Scholar]
  123. Watanabe M, Kojima H, Fukui M. Proposal of Effusibacillus lacus gen. nov., sp. nov., and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov. Int J Syst Evol Microbiol 2014; 64:2770–2774 [View Article] [PubMed]
    [Google Scholar]
  124. Jojima T, Ioku Y, Fukuta Y, Shirasaka N, Matsumura Y et al. Collibacillus ludicampi gen. nov., sp. nov., a new soil bacterium of the family Alicyclobacillaceae. Int J Syst Evol Microbiol 2023; 73: [View Article]
    [Google Scholar]
  125. Collins MD, Lund BM, Farrow JAE, Schleifer KH. Chemotaxonomic Study of an Alkalophilic Bacterium, Exiguobacterium aurantiacum gen. nov., sp. nov. Microbiology 1983; 129:2037–2042 [View Article]
    [Google Scholar]
  126. Zhou Y, Xu J, Xu L, Tindall BJ. Falsibacillus pallidus to replace the homonym Bacillus pallidus Zhou et al. 2008. Int J Syst Evol Microbiol 2009; 59:3176–3180 [View Article]
    [Google Scholar]
  127. Glaeser SP, Dott W, Busse HJ, Kämpfer P. Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus. Int J Syst Evol Microbiol 2013; 63:2934–2944 [View Article]
    [Google Scholar]
  128. Chen Y-G, Peng D-J, Chen Q-H, Zhang Y-Q, Tang S-K et al. Jeotgalibacillus soli sp. nov., isolated from non-saline forest soil, and emended description of the genus Jeotgalibacillus. Antonie Van Leeuwenhoek 2010; 98:415–421 [View Article] [PubMed]
    [Google Scholar]
  129. Yoon JH, Weiss N, Lee KC, Lee IS, Kang KH et al. Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983. as Marinibacillus marinus gen nov., comb. nov. Int J Syst Evol Microbiol 2001; 51:2087–2093 [View Article]
    [Google Scholar]
  130. Yaakop AS, Chan K-G, Ee R, Kahar UM, Kon WC et al. Isolation of Jeotgalibacillus malaysiensis sp. nov. from a sandy beach, and emended description of the genus Jeotgalibacillus. Int J Syst Evol Microbiol 2015; 65:2215–2221 [View Article] [PubMed]
    [Google Scholar]
  131. Klenk H-P, Lapidus A, Chertkov O, Copeland A, Del Rio TG et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genomic Sci 2011; 5:121–134 [View Article] [PubMed]
    [Google Scholar]
  132. Reiner JE, Jung T, Lapp CJ, Siedler M, Bunk B et al. Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at São Miguel Island, and emended description of the genus Kyrpidia. Int J Syst Evol Microbiol 2018; 68:3735–3740 [View Article] [PubMed]
    [Google Scholar]
  133. Pirie JH. The genus listerella pirie. Science 1940; 91:383 [View Article] [PubMed]
    [Google Scholar]
  134. Sneath PHA, Jones D. Brochothrix, a new genus tentatively placed in the family Lactobacillaceae. Int J Syst Bacteriol 1976; 26:102–104 [View Article]
    [Google Scholar]
  135. Liu R, Huang Z, Dong C, Shao Z. Lottiidibacillus patelloidae gen. nov., sp. nov., isolated from the intestinal tract of a marine limpet and reclassification of Bacillus taeanensis as Maribacillus taeanensis gen. nov., comb. nov. Antonie van Leeuwenhoek 2019; 112:797–807 [View Article]
    [Google Scholar]
  136. Hao MV, Kocur M, Komagata K. Marinococcus gen. nov., a new genus for motile cocci with meso-diaminopimelic acid in the cell wall; and marinococcus Albus sp. nov. and Marinococcus halophilus (novitsky and kushner) comb. nov. J Gen Appl Microbiol 1984; 30:449–459 [View Article]
    [Google Scholar]
  137. Wang Y, Chunyu W-X, Jiang G-Q, Huang L, Zhang B et al. Aidingibacillus halophilus gen. nov., sp. nov., a novel member of the family Bacillaceae. Antonie van Leeuwenhoek 2018; 111:601–608 [View Article]
    [Google Scholar]
  138. Xu J, Xu X-H, Men M-Q, Meng Q-X, Xu B-S. Aliibacillus thermotolerans gen. nov., sp. nov.: a thermophilic and heterotrophic ammonia-oxidizing bacterium from compost. Arch Microbiol 2018; 200:1357–1363 [View Article]
    [Google Scholar]
  139. Didari M, Amoozegar MA, Bagheri M, Schumann P, Spröer C et al. Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov. Int J Syst Evol Microbiol 2012; 62:2691–2697 [View Article] [PubMed]
    [Google Scholar]
  140. Echigo A, Minegishi H, Mizuki T, Kamekura M, Usami R. Geomicrobium halophilum gen. nov., sp. nov., a moderately halophilic and alkaliphilic bacterium isolated from soil. Int J Syst Evol Microbiol 2010; 60:990–995 [View Article] [PubMed]
    [Google Scholar]
  141. Echigo A, Minegishi H, Shimane Y, Kamekura M, Usami R. Natribacillus halophilus gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium isolated from soil. Int J Syst Evol Microbiol 2012; 62:289–294 [View Article]
    [Google Scholar]
  142. Vishnuvardhan Reddy S, Thirumala M, Sasikala C, Venkata Ramana C. Salibacterium halotolerans gen. nov., sp. nov., a bacterium isolated from a salt pan, reclassification of Bacillus qingdaonensis as Salibacterium qingdaonense comb. nov. and Bacillus halochares as Salibacterium halochares comb. nov. Int J Syst Evol Microbiol 2015; 65:4270–4275 [View Article]
    [Google Scholar]
  143. Jang J-Y, Oh YJ, Lim SK, Park HK, Lee C et al. Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi. J Microbiol 2018; 56:880–885 [View Article]
    [Google Scholar]
  144. Carrasco IJ, Márquez MC, Xue Y, Ma Y, Cowan DA et al. Salsuginibacillus kocurii gen. nov., sp. nov., a moderately halophilic bacterium from soda-lake sediment. Int J Syst Evol Microbiol 2007; 57:2381–2386 [View Article]
    [Google Scholar]
  145. Li W-J, Zhi X-Y, Euzeby JP. Proposal of Yaniellaceae fam. nov., Yaniella gen. nov. and Sinobaca gen. nov. as replacements for the illegitimate prokaryotic names Yaniaceae Li et al. 2005, Yania Li et al. 2004, emend Li et al. 2005, and Sinococcus Li et al. 2006, respectively. Int J Syst Evol Microbiol 2008; 58:525–527 [View Article]
    [Google Scholar]
  146. Sultanpuram VR, Mothe T. Thalassorhabdus alkalitolerans gen. nov., sp. nov., a novel Bacillaceae member isolated from marine sediment. Int J Syst Evol Microbiol 2018; 68:2969–2976 [View Article] [PubMed]
    [Google Scholar]
  147. Yang G, Chen J, Zhou S. Novibacillus thermophilus gen. nov., sp. nov., a gram-staining-negative and moderately thermophilic member of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 2015; 65:2591–2597 [View Article] [PubMed]
    [Google Scholar]
  148. Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J et al. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 1994; 44:812–826 [View Article] [PubMed]
    [Google Scholar]
  149. Shida O, Takagi H, Kadowaki K, Komagata K. Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int J Syst Evol Microbiol 1996; 46:939–946 [View Article]
    [Google Scholar]
  150. Zaitsev GM, Tsitko IV, Rainey FA, Trotsenko YA, Uotila JS et al. New aerobic ammonium-dependent obligately oxalotrophic bacteria: description of Ammoniphilus oxalaticus gen. nov., sp. nov. and Ammoniphilus oxalivorans gen. nov., sp. nov. Int J Syst Evol Microbiol 1998; 48:151–163 [View Article]
    [Google Scholar]
  151. De Vos P, Ludwig W, Schleifer K-H, Whitman WB. Family IV. Paenibacillaceae fam. nov. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W et al. eds Bergey’s Manual of Systematic Bacteriology New York: Springer; 2009 p 269
    [Google Scholar]
  152. Kämpfer P, Rosselló-Mora R, Falsen E, Busse HJ, Tindall BJ. Cohnella thermotolerans gen. nov., sp. nov., and classification of “Paenibacillus hongkongensis” as Cohnella hongkongensis sp. nov. Int J Syst Evol Microbiol 2006; 56:781–786 [View Article] [PubMed]
    [Google Scholar]
  153. Keita MB, Padhmanabhan R, Caputo A, Robert C, Delaporte E et al. Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae. Stand Genomic Sci 2014; 9:807–820 [View Article] [PubMed]
    [Google Scholar]
  154. Rivas R, García-Fraile P, Zurdo-Piñeiro JL, Mateos PF, Martínez-Molina E et al. Saccharibacillus sacchari gen. nov., sp. nov., isolated from sugar cane. Int J Syst Evol Microbiol 2008; 58:1850–1854 [View Article] [PubMed]
    [Google Scholar]
  155. Chen R-W, Zhang J, He Y-Q, Wang K-X, Li C et al. Longirhabdus pacifica gen. nov., sp. nov., isolated from a deep-sea hydrothermal sediment in the West Pacific Ocean. Int J Syst Evol Microbiol 2019; 69:3362–3367 [View Article] [PubMed]
    [Google Scholar]
  156. Cao W-R, Guo L-Y, Du Z-J, Das A, Saren G et al. Chengkuizengella sediminis gen. nov. sp. nov., isolated from sediment. Int J Syst Evol Microbiol 2017; 67:2672–2678 [View Article]
    [Google Scholar]
  157. Chhe C, Uke A, Baramee S, Tachaapaikoon C, Pason P et al. Insulambacter thermoxylanivorax sp. nov., a thermophilic xylanolytic bacterium isolated from compost. Int J Syst Evol Microbiol 2023; 73:1–8 [View Article] [PubMed]
    [Google Scholar]
  158. Kukolya J, Bata-Vidács I, Luzics S, Tóth E, Kéki Z et al. Xylanibacillus composti gen. nov., sp. nov., isolated from compost. Int J Syst Evol Microbiol 2018; 68:698–702 [View Article]
    [Google Scholar]
  159. Touzel JP, O’Donohue M, Debeire P, Samain E, Breton C. Thermobacillus xylanilyticus gen. nov., sp. nov., a new aerobic thermophilic xylan-degrading bacterium isolated from farm soil. Int J Syst Evol Microbiol 2000; 50 Pt 1:315–320 [View Article]
    [Google Scholar]
  160. Sakai M, Deguchi D, Hosoda A, Kawauchi T, Ikenaga M. Ammoniibacillus agariperforans gen. nov., sp. nov., a thermophilic, agar-degrading bacterium isolated from compost. Int J Syst Evol Microbiol 2015; 65:570–577 [View Article] [PubMed]
    [Google Scholar]
  161. Saha P, Krishnamurthi S, Bhattacharya A, Sharma R, Chakrabarti T. Fontibacillus aquaticus gen. nov., sp. nov., isolated from a warm spring. Int J Syst Evol Microbiol 2010; 60:422–428 [View Article]
    [Google Scholar]
  162. Guo LY, Xia J, Ling SK, Chen GJ, Du ZJ. Marinicrinis sediminis gen. nov., sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2016; 66:3725–3730 [View Article] [PubMed]
    [Google Scholar]
  163. Hwang WM, Ko Y, Kang K, Ahn TY. Paludirhabdus telluriireducens gen. nov., sp. nov. and Paludirhabdus pumila sp. nov., isolated from soil of a mountain wetland and emended description of Gorillibacterium massiliense. Int J Syst Evol Microbiol 2018; 68:3040–3046 [View Article] [PubMed]
    [Google Scholar]
  164. Saha T, Ranjan VK, Ganguli S, Thakur S, Chakraborty B et al. Pradoshia eiseniae gen. nov., sp. nov., a spore-forming member of the family Bacillaceae capable of assimilating 3-nitropropionic acid, isolated from the anterior gut of the earthworm Eisenia fetida. Int J Syst Evol Microbiol 2019; 69:1265–1273 [View Article] [PubMed]
    [Google Scholar]
  165. Roohi A, Ahmed I, Paek J, Sin Y, Abbas S et al. Bacillus pakistanensis sp. nov., a halotolerant bacterium isolated from salt mines of the Karak Area in Pakistan. Antonie van Leeuwenhoek 2014; 105:1163–1172 [View Article]
    [Google Scholar]
  166. Ventosa A, Márquez MC, Ruiz-Berraquero F, Kocur M. Salinicoccus roseus gen. nov., sp. nov., a New Moderately Halophilic Gram-Positive Coccus. Syst Appl Microbiol 1990; 13:29–33 [View Article]
    [Google Scholar]
  167. Amoozegar MA, Bagheri M, Makhdoumi-Kakhki A, Didari M, Schumann P et al. Aliicoccus persicus gen. nov., sp. nov., a halophilic member of the Firmicutes isolated from a hypersaline lake. Int J Syst Evol Microbiol 2014; 64:1964–1969 [View Article] [PubMed]
    [Google Scholar]
  168. Li Y, Wang S, Xue H, Chang J, Guo L et al. Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus × euramericana canker. Int J Syst Evol Microbiol 2017; 67:789–794 [View Article]
    [Google Scholar]
  169. Yoon JH, Lee KC, Weiss N, Kang KH, Park YH. Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal. Int J Syst Evol Microbiol 2003; 53:595–602 [View Article] [PubMed]
    [Google Scholar]
  170. Alves M, Nogueira C, de Magalhaes-Sant’Ana A, Chung AP, Morais PV et al. Nosocomiicoccus ampullae gen. nov., sp. nov., isolated from the surface of bottles of saline solution used in wound cleansing. Int J Syst Evol Microbiol 2008; 58:2939–2944 [View Article]
    [Google Scholar]
  171. Jiang F, Cao S-J, Li Z-H, Fan H, Li H-F et al. Salisediminibacterium halotolerans gen. nov., sp. nov., a halophilic bacterium from soda lake sediment. Int J Syst Evol Microbiol 2012; 62:2127–2132 [View Article] [PubMed]
    [Google Scholar]
  172. Zhao B, Lu W, Zhang S, Liu K, Yan Y et al. Reclassification of Bacillus saliphilus as Alkalicoccus saliphilus gen. nov., comb. nov., and description of Alkalicoccus halolimnae sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol 2017; 67:1557–1563 [View Article] [PubMed]
    [Google Scholar]
  173. Xu L, Huang X-X, Wang H-T, Tang S-K, Shen B et al. Description and characterization of three endophytic Bacillaceae from the halophyte Suaeda salsa: Paenalkalicoccus suaedae gen. nov., sp. nov., Cytobacillus suaedae sp. nov., and Bacillus suaedae sp. nov. Int J Syst Evol Microbiol 2022; 72:005337 [View Article]
    [Google Scholar]
  174. Sultanpuram VR, Mothe T. Salipaludibacillus aurantiacus gen. nov., sp. nov. a novel alkali tolerant bacterium, reclassification of Bacillus agaradhaerens as Salipaludibacillus agaradhaerens comb. nov. and Bacillus neizhouensis as Salipaludibacillus neizhouensis comb. nov. Int J Syst Evol Microbiol 2016; 66:2747–2753 [View Article] [PubMed]
    [Google Scholar]
  175. Ruiz-Romero E, Coutiño-Coutiño M de LA, Valenzuela-Encinas C, López-Ramírez MP, Marsch R et al. Texcoconibacillus texcoconensis gen. nov., sp. nov., alkalophilic and halotolerant bacteria isolated from soil of the former lake Texcoco (Mexico). Int J Syst Evol Microbiol 2013; 63:3336–3341 [View Article] [PubMed]
    [Google Scholar]
  176. Kitahara K, Suzuki J. Sporolactobacillus Nov. Subgen. J Gen Appl Microbiol 1963; 9:59–71 [View Article]
    [Google Scholar]
  177. Tsujimoto Y, Saito R, Furuya H, Ishihara D, Sahara T et al. Caenibacillus caldisaponilyticus gen. nov., sp. nov., a thermophilic, spore-forming and phospholipid-degrading bacterium isolated from acidulocompost. Int J Syst Evol Microbiol 2016; 66:2684–2690 [View Article] [PubMed]
    [Google Scholar]
  178. Lin P, Yan ZF, Yi TH. Camelliibacillus cellulosilyticus gen. nov., sp. nov., a cellulose-degrading bacterium isolated from tea. Int J Syst Evol Microbiol 2018; 68:1867–1873 [View Article] [PubMed]
    [Google Scholar]
  179. Hatayama K, Shoun H, Ueda Y, Nakamura A. Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolacto. Int J Syst Evol Microbiol 2006; 56:2545–2551 [View Article]
    [Google Scholar]
  180. Lee SD, Lee DW. Scopulibacillus darangshiensis gen. nov., sp. nov., isolated from rock. J Microbiol 2009; 47:710–715 [View Article]
    [Google Scholar]
  181. Prasirtsak B, Thongchul N, Tolieng V, Tanasupawat S. Terrilactibacillus laevilacticus gen. nov., sp. nov., isolated from soil. Int J Syst Evol Microbiol 2016; 66:1311–1316 [View Article]
    [Google Scholar]
  182. Schleifer K-H, Bell JA. Family VIII. Staphylococcaceae fam. nov. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W et al. eds Bergey’s Manual of Systematic Bacteriology New York: Springer; 2009 p 392
    [Google Scholar]
  183. Rosenbach F. Microorganismen Bei Den Wund-Infections-Krankheiten Des Menschen Wiesbaden: J.F. Bergmann; 1884 pp 1–22 [View Article]
    [Google Scholar]
  184. Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ et al. Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. nov and Macrococcus carouselicus sp. nov. Int J Syst Bacteriol 1998; 48 Pt 3:859–877 [View Article] [PubMed]
    [Google Scholar]
  185. Madhaiyan M, Wirth JS, Saravanan VS. Phylogenomic analyses of the Staphylococcaceae family suggest the reclassification of five species within the genus Staphylococcus as heterotypic synonyms, the promotion of five subspecies to novel species, the taxonomic reassignment of five Staphylococcus species to Mammaliicoccus gen. nov., and the formal assignment of Nosocomiicoccus to the family Staphylococcaceae. Int J Syst Evol Microbiol 2020; 70:5926–5936 [View Article] [PubMed]
    [Google Scholar]
  186. Johnson DB, Holmes DS, Vergara E, Holanda R, Pakostova E. Sulfoacidibacillus ferrooxidans, gen. nov., sp. nov., Sulfoacidibacillus thermotolerans, gen. nov., sp. nov., and Ferroacidibacillus organovorans, gen. nov., sp. nov.: Extremely acidophilic chemolitho-heterotrophic Firmicutes. Res Microbiol 2023; 174:104008 [View Article] [PubMed]
    [Google Scholar]
  187. Shi R, Yin M, Tang S-K, Lee J-C, Park D-J et al. Bacillus luteolus sp. nov., a halotolerant bacterium isolated from a salt field. Int J Syst Evol Microbiol 2011; 61:1344–1349 [View Article] [PubMed]
    [Google Scholar]
  188. Sarr M, Lo CI, Tall ML, Fadlane A, Senghor B et al. Taxonogenomics description of Bacillus dakarensis sp. nov., Bacillus sinesaloumensis sp. nov. and Bacillus massiliogabonensis sp. nov., three new species isolated from human stools. New Microbes New Infect 2020; 37:100718 [View Article] [PubMed]
    [Google Scholar]
  189. Wang HL, Zhang J, Sun L. Bacillus iocasae sp. nov., isolated from pacmanus hydrothermal field, manus basin. Int J Syst Evol Microbiol 2017; 67:3547–3552 [View Article] [PubMed]
    [Google Scholar]
  190. Jiang Z, Zhang D-F, Khieu T-N, Son CK, Zhang X-M et al. Bacillus tianshenii sp. nov., isolated from a marine sediment sample. Int J Syst Evol Microbiol 2014; 64:1998–2002 [View Article]
    [Google Scholar]
  191. Gössner AS, Devereux R, Ohnemüller N, Acker G, Stackebrandt E et al. Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica. Appl Environ Microbiol 1999; 65:5124–5133 [View Article] [PubMed]
    [Google Scholar]
  192. Li J, Zhang G-T, Yang J, Tian X-P, Wang F-Z et al. Marininema mesophilum gen. nov., sp. nov., a thermoactinomycete isolated from deep sea sediment, and emended description of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 2012; 62:1383–1388 [View Article] [PubMed]
    [Google Scholar]
  193. Matsuo Y, Katsuta A, Matsuda S, Shizuri Y, Yokota A et al. Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. Int J Syst Evol Microbiol 2006; 56:2837–2842 [View Article] [PubMed]
    [Google Scholar]
  194. von Jan M, Riegger N, Pötter G, Schumann P, Verbarg S et al. Kroppenstedtia eburnea gen. nov., sp. nov., a thermoactinomycete isolated by environmental screening, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006 emend. Yassin et al. 2009. Int J Syst Evol Microbiol 2011; 61:2304–2310 [View Article]
    [Google Scholar]
  195. Yassin AF, Hupfer H, Klenk H-P, Siering C. Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006. Int J Syst Evol Microbiol 2009; 59:454–459 [View Article]
    [Google Scholar]
  196. Tsiklinsky P. Sur les mucedinéés thermophiles. Ann l’Institut Pasteur 1899; 13:500–505
    [Google Scholar]
  197. Park D-J, Dastager SG, Lee J-C, Yeo S-H, Yoon J-H et al. Shimazuella kribbensis gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 2007; 57:2660–2664 [View Article] [PubMed]
    [Google Scholar]
  198. Frikha-Dammak D, Fardeau M-L, Cayol J-L, Ben Fguira-Fourati L, Najeh S et al. Paludifilum halophilum gen. nov., sp. nov., a thermoactinomycete isolated from superficial sediment of a solar saltern. Int J Syst Evol Microbiol 2016; 66:5371–5378 [View Article] [PubMed]
    [Google Scholar]
  199. Hatayama K, Shoun H, Ueda Y, Nakamura A. Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family “Thermoactinomycetaceae” isolated from compost. Int J Syst Evol Microbiol 2005; 55:2101–2104 [View Article] [PubMed]
    [Google Scholar]
  200. Wang K-X, He Y-Q, Chen R-W, Li C, Tian X-P et al. Staphylospora marina gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae, isolated from a deep-sea hydrothermal vent in the Pacific Ocean. Int J Syst Evol Microbiol 2019; 69:1452–1458 [View Article] [PubMed]
    [Google Scholar]
  201. Guan X, Liu C, Fang B, Zhao J, Jin P et al. Baia soyae gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae, isolated from soybean root [Glycine max (L.) Merr]. Int J Syst Evol Microbiol 2015; 65:3754–3760 [View Article] [PubMed]
    [Google Scholar]
  202. Buss SN, Cole JA, Hannett GE, Nazarian EJ, Nazarian L et al. Hazenella coriacea gen. nov., sp. nov., isolated from clinical specimens. Int J Syst Evol Microbiol 2013; 63:4087–4093 [View Article] [PubMed]
    [Google Scholar]
  203. Yoon JH, Kim IG, Shin YK, Park YH. Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 2005; 55:395–400 [View Article]
    [Google Scholar]
  204. Zhang Y, Li J, Tian X. Marinithermofilum abyssi gen. nov., sp. nov. and Desmospora profundinema sp. nov., isolated from a deep-sea sediment, and emended description of the genus Desmospora yassin et al. 2009. Int J Syst Evol Microbiol 2009; 65:2622–2629
    [Google Scholar]
  205. Tsubouchi T, Shimane Y, Mori K, Usui K, Hiraki T et al. Polycladomyces abyssicola gen. nov., sp. nov., a thermophilic filamentous bacterium isolated from hemipelagic sediment. Int J Syst Evol Microbiol 2013; 63:1972–1981 [View Article]
    [Google Scholar]
  206. Hatayama K, Kuno T. Croceifilum oryzae gen. nov., sp. nov., isolated from rice paddy soil. Int J Syst Evol Microbiol 2015; 65:4061–4065 [View Article] [PubMed]
    [Google Scholar]
  207. Yu T-T, Zhang B-H, Yao J-C, Tang S-K, Zhou E-M et al. Lihuaxuella thermophila gen. nov., sp. nov., isolated from a geothermal soil sample in Tengchong, Yunnan, south-west China. Antonie van Leeuwenhoek 2012; 102:711–718 [View Article]
    [Google Scholar]
  208. Addou AN, Schumann P, Spröer C, Hacene H, Cayol J-L et al. Melghirimyces algeriensis gen. nov., sp. nov., a member of the family Thermoactinomycetaceae, isolated from a salt lake. Int J Syst Evol Microbiol 2012; 62:1491–1498 [View Article] [PubMed]
    [Google Scholar]
  209. Zhou E-M, Yu T-T, Liu L, Ming H, Yin Y-R et al. Geothermomicrobium terrae gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 2014; 64:2998–3004 [View Article] [PubMed]
    [Google Scholar]
  210. Zarparvar P, Amoozegar MA, Nikou MM, Schumann P, Ventosa A. Salinithrix halophila gen. nov., sp. nov., a halophilic bacterium in the family Thermoactinomycetaceae. Int J Syst Evol Microbiol 2014; 64:4115–4119 [View Article]
    [Google Scholar]
  211. Kim M, Kim T, Ri S, Jiang F, Chang X et al. Risungbinella pyongyangensis gen. nov., sp. nov., a mesophilic member of the family Thermoactinomycetaceae isolated from an agricultural soil sample. Int J Syst Evol Microbiol 2015; 65:2726–2733 [View Article]
    [Google Scholar]
/content/journal/ijsem/10.1099/ijsem.0.006539
Loading
/content/journal/ijsem/10.1099/ijsem.0.006539
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF

Supplementary material 2

EXCEL

Supplementary material 3

EXCEL

Supplementary material 4

EXCEL

Supplementary material 5

EXCEL

Supplementary material 6

EXCEL

Supplementary material 7

EXCEL

Supplementary material 8

EXCEL
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An error occurred
Approval was partially successful, following selected items could not be processed due to error