Skip to content
1887

Abstract

A novel Gram-stain-negative, rod-shaped, non-spore-forming, aerobic, motile bacterium with a single polar or subpolar flagellum, designated strain H3510, was isolated from marine alga collected on sea shore of Yantai, PR China. The organism grew optimally at 28 °C and pH 7.0 and in presence of 3.0 % (w/v) NaCl. The strain exhibited positive catalase activity but negative oxidase and nitrate reduction activities. The predominant cellular fatty acids were C 7 and/or C 6, 11-methyl C 7, and C. Additionally, the major polar lipids were phosphatidylglycerol, phosphatidylmonomethylethanolamine, diphosphatidylglycerol, and phosphatidylethanolamine; the respiratory quinone was ubiquinone 10 (Q-10). The genomic DNA G+C content of strain H3510 was 54.2%. The novel strain showed the closest relationship with KMM 9699 with 98.2 % 16S rRNA gene sequence similarity. The calculated values for average nucleotide identity and DNA–DNA hybridization between strain H3510 and the phylogenetically related species were in the range of 71.3–74.9 % and 13.7–19.9 %, respectively. Based on polyphasic analyses, strain H3510 was identified as representing a novel species of the genus , for which the name sp. nov. is proposed. The type strain is H3510 (=KCTC 8206=MCCC 1K04325). The heterologously expressed inositol 2-dehydrogenase gene from strain H3510 displayed high oxidation activity on -inositol and showed potential in the production of rare stereoisomers of inositol, such as -inositol.

Funding
This study was supported by the:
  • the He'nan Province University Youth Researcher Support Project (Award 2016GGJS-102)
    • Principle Award Recipient: YanWang
  • the Foundation of Henan Science and Technology Agency of China (Award 202310472030)
    • Principle Award Recipient: YanWang
  • Key Laboratory of Microbial Resources and Drug Development in Guizhou Province (Award 22A350008)
    • Principle Award Recipient: TaoLi
  • the Key Scientific Research Project of Colleges and Universities in Henan Province (Award 23A180016)
    • Principle Award Recipient: YanWang
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006475
2024-07-29
2025-07-12
Loading full text...

Full text loading...

References

  1. Suzuki T, Muroga Y, Takahama M, Nishimura Y. Roseigium denhamense gen. nov., sp. nov. and Roseibium hemelinense sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from the east and west coasts of Australia. Int J Syst Evol Microbiol 2000; 50:2151–2156 [View Article] [PubMed]
    [Google Scholar]
  2. Biebl H, Pukall R, Lunsdorf H, Schulz S, Allgaier M. Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina comb. nov. and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappia and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense. Int J Syst Evol Microbiol 2007; 57:1095–1107 [View Article]
    [Google Scholar]
  3. Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold L-M et al. Analysis of 1,000+ type-strain genomes substantially improves taxonomic classification of Alphaproteobacteria. Front Microbiol 2020; 11:468 [View Article] [PubMed]
    [Google Scholar]
  4. Park SH, Kim JY, Heo MS. Labrenzia callyspongiae sp. nov., isolated from marine sponge Callyspongia elegans in Jeju Island. J Microbiol Biotechnol 2019; 29:1969–1974 [View Article]
    [Google Scholar]
  5. Liu Y, Pei T, Du J, Chao M, Deng M-R et al. Roseibium litorale sp. nov., isolated from a tidal flat sediment and proposal for the reclassification of Labrenzia polysiphoniae as Roseibium polysiphoniae comb. nov. Int J Syst Evol Microbiol 2021; 71: [View Article] [PubMed]
    [Google Scholar]
  6. Bibi F, Jeong JH, Chung EJ, Jeon CO, Chung YR. Labrenzia suaedae sp. nov., a marine bacterium isolated from a halophyte, and emended description of the genus Labrenzia. Int J Syst Evol Microbiol 2014; 64:1116–1122 [View Article] [PubMed]
    [Google Scholar]
  7. Liu J, Wang Y, Yang X, Sun Z, Ren Q et al. Roseibium sediminis sp. nov., isolated from sea surface sediment. Int J Syst Evol Microbiol 2017; 67:2862–2867 [View Article] [PubMed]
    [Google Scholar]
  8. Weerawongwiwat V, Kim J-H, Yoon J-H, Suh MK, Kim HS et al. Roseibium limicola sp. nov., isolated from tidal mudflat. Int J Syst Evol Microbiol 2021; 71:10 [View Article] [PubMed]
    [Google Scholar]
  9. Lee MW, Kim JM, Kim KH, Choi DG, Lee JK et al. Roseibium algicola sp. nov. and Roseibium porphyridii sp. nov., isolated from marine red algae. Int J Syst Evol Microbiol 2024; 74: [View Article]
    [Google Scholar]
  10. Wang Y, Zhou C, Ming H, Kang J, Chen H et al. Pseudofulvibacter marinus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2016; 66:1301–1305 [View Article]
    [Google Scholar]
  11. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  12. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792–1797 [View Article] [PubMed]
    [Google Scholar]
  13. Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol 2021; 38:3022–3027 [View Article] [PubMed]
    [Google Scholar]
  14. Rosselló-Móra R, Amann R. Past and future species definitions for Bacteria and Archaea. Syst Appl Microbiol 2015; 38:209–216 [View Article] [PubMed]
    [Google Scholar]
  15. Kim M, Oh H-S, Park S-C, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article]
    [Google Scholar]
  16. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:152–155
    [Google Scholar]
  17. Luo R, Liu B, Xie Y, Li Z, Huang W et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 2012; 1:18 [View Article] [PubMed]
    [Google Scholar]
  18. Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with glimmer. Bioinformatics 2007; 23:673–679 [View Article] [PubMed]
    [Google Scholar]
  19. Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A et al. A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nat Biotechnol 2018; 36:996–1004 [View Article] [PubMed]
    [Google Scholar]
  20. Yoon SH, Ha SM, Lim JM, Kwon SJ, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1281–1286 [View Article] [PubMed]
    [Google Scholar]
  21. Meier-Kolthoff JP, Carbasse JS, Peinado-Olarte RL, Göker M. TYGS and LPSN:a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes. Nucleic Acids Res 2022; 50:D801–D807 [View Article] [PubMed]
    [Google Scholar]
  22. Zhang H, Yohe T, Huang L, Entwistle S, Wu P et al. dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. Nucleic Acids Res 2018; 46:W95–W101 [View Article] [PubMed]
    [Google Scholar]
  23. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article] [PubMed]
    [Google Scholar]
  24. Auch AF, von Jan M, Klenk H-P, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010; 2:117–134 [View Article] [PubMed]
    [Google Scholar]
  25. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article]
    [Google Scholar]
  26. Beveridge TJ, Lawrence JR, Murray RGE. Sampling and staining for light microscopy. In Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM et al. eds Methods for General and Molecular Microbiology Washington, DC: ASM Press; 2007 pp 19–33 [View Article]
    [Google Scholar]
  27. Breznak JA, Costilow RN. Physicochemical factors in growth. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. eds Methods for General and Molecular Bacteriology Washington, DC: ASM Press; 1994 pp 137–154
    [Google Scholar]
  28. Tindall BJ, Sikorski J, Smibert RM, Krieg NR. Phenotypic characterization and the principles of comparative systematics. In Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM et al. eds Methods for General and Molecular Microbiology Washington, DC: ASM Press; 2007 pp 330–393 [View Article]
    [Google Scholar]
  29. Romanenko LA, Kurilenko VV, Guzev KV, Svetashev VI. Characterization of Labrenzia polysiphoniae sp. nov. isolated from red alga Polysiphonia sp. Arch Microbiol 2019; 201:705–712 [View Article] [PubMed]
    [Google Scholar]
  30. Kim B-C, Park JR, Bae J-W, Rhee S-K, Kim K-H et al. Stappia marina sp. nov., a marine bacterium isolated from the Yellow Sea. Int J Syst Evol Microbiol 2006; 56:75–79 [View Article] [PubMed]
    [Google Scholar]
  31. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. In MIDI Technical Note vol 101 Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  32. Collins MD. Isoprenoid quinones. In Goodfellow M, O’Donnell AG. eds Chemical Methods in Prokaryotic Systematics Chichester: Wiley Press; 1994 pp 265–309
    [Google Scholar]
  33. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  34. Komagata K, Suzuki K. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–207 [View Article]
    [Google Scholar]
  35. McLaurin J, Kierstead ME, Brown ME, Hawkes CA, Lambermon MHL et al. Cyclohexanehexol inhibitors of Abeta aggregation prevent and reverse Alzheimer phenotype in a mouse model. Nat Med 2006; 12:801–808 [View Article] [PubMed]
    [Google Scholar]
  36. Kang D-M, Michon C, Morinaga T, Tanaka K, Takenaka S et al. Bacillus subtilis IolQ (DegA) is a transcriptional repressor of iolX encoding NAD+-dependent scyllo-inositol dehydrogenase. BMC Microbiol 2017; 17:154 [View Article] [PubMed]
    [Google Scholar]
/content/journal/ijsem/10.1099/ijsem.0.006475
Loading
/content/journal/ijsem/10.1099/ijsem.0.006475
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error