Skip to content
1887

Abstract

A Gram-stain-positive actinomycete, designated REN17, was isolated from fermented grains of Baijiu collected from Sichuan, PR China. It exhibited branched substrate mycelia and a sparse aerial mycelium. The optimal growth conditions for REN17 were determined to be 28 °C and pH 7, with a NaCl concentration of 0 % (w/v). -Diaminopimelic acid was the diagnostic amino acid of the cell-wall peptidoglycan and the polar lipids were composed of phosphatidylethanolamine, phosphatidylinositol, an unidentified phospholipid, two unidentified lipids and four unidentified glycolipids. The predominant menaquinone was MK-9 (H), MK-9 (H), MK-9 (H) and MK-9 (H). The major fatty acids were iso-C. The 16S rRNA sequence of REN17 was most closely related to those of SUN 51 (99.8 %), BH-SS-21 (99.6 %) and JCM 4521 (98.9 %). The digital DNA–DNA hybridization, average nucleotide identity and average amino acid identify values between REN17 and its closest replated strain, of SUN 51, were 35.9, 88.9 and 87.3 %, respectively. Therefore, REN17 represents a novel species within the genus , for which the name sp. nov. is proposed. The type strain is REN17 (=GDMCC 4.193=JCM 34712). While exploring the function of the strain, REN17 was found to possess the ability to transform major ginsenosides of (Burk.) F.H. Chen (Araliaceae) into minor ginsenoside through HPLC separation, which was due to the presence of β-glucosidase. The recombinant β-glucosidase was constructed and purified, which could produce minor ginsenosides of Rg3 and C-K. Finally, the enzymatic properties were characterized.

Funding
This study was supported by the:
  • Major Science and Technology Project of Yunnan (Award 202102AE090042)
    • Principle Award Recipient: QingRen
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006392
2024-05-20
2025-06-23
Loading full text...

Full text loading...

References

  1. Zou W, Zhao C, Luo H. Diversity and function of microbial community in Chinese strong-flavor baijiu ecosystem: a review. Front Microbiol 2018; 9:671 [View Article] [PubMed]
    [Google Scholar]
  2. Tokatli A, Idil O, Veyisoglu A, Saygin H, Guven K et al. Streptomyces boluensis sp. nov., isolated from lake sediment. Arch Microbiol 2020; 202:2303–2309 [View Article] [PubMed]
    [Google Scholar]
  3. Zhao J, Tang X, Li K, Guo Y, Feng M et al. Streptomyces paludis sp. nov., isolated from an alpine wetland soil. Czech Math J 2020; 70:773–778 [View Article] [PubMed]
    [Google Scholar]
  4. Sun B, Yuan L, Xia Z, Wan C, Zhang L. Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the tailan river in Xinjiang, China. Arch Microbiol 2020; 202:1639–1646 [View Article] [PubMed]
    [Google Scholar]
  5. Hoyos H, Santos S, Da Silva LJ, Paulino Silva FS, Bonaldo Genuário D et al. Streptomyces rhizosphaericola sp. nov., an actinobacterium isolated from the wheat rhizosphere. Int J Syst Evol Microbiol 2019; 69:2431–2439 [View Article] [PubMed]
    [Google Scholar]
  6. Moody SC, Zhao B, Lei L, Nelson DR, Mullins JGL et al. Investigating conservation of the albaflavenone biosynthetic pathway and cyp170 bifunctionality in streptomycetes. FEBS J 2012; 279:1640–1649 [View Article] [PubMed]
    [Google Scholar]
  7. Liu H, Lu X, Hu Y, Fan X. Chemical constituents of Panax ginseng and Panax notoginseng explain why they differ in therapeutic efficacy. Pharmacol Res 2020; 161:105263 [View Article] [PubMed]
    [Google Scholar]
  8. Dong C, Li J, Zhao M, Chen L, Zhai X et al. Pharmacological effect of Panax notoginseng saponins on cerebral ischemia in animal models. Biomed Res Int 2022; 2022:4281483 [View Article] [PubMed]
    [Google Scholar]
  9. Biswas T, Mathur A-K, Mathur A. A literature update elucidating production of Panax ginsenosides with a special focus on strategies enriching the anti-neoplastic minor ginsenosides in ginseng preparations. Appl Microbiol Biotechnol 2017; 101:4009–4032 [View Article] [PubMed]
    [Google Scholar]
  10. Li C, Chen F, Yu K. Absorption, disposition, and pharmacokinetics of saponins from Chinese medicinal herbs: what do we know and what do we need to know more?. Curr Drug Metab 2012; 13:577–598 [View Article] [PubMed]
    [Google Scholar]
  11. Hwang S-K, Jeong Y-J, Cho H-J, Park Y-Y, Song K-H et al. Rg3-enriched red ginseng extract promotes lung cancer cell apoptosis and mitophagy by ros production. J Ginseng Res 2022; 46:138–146 [View Article] [PubMed]
    [Google Scholar]
  12. Sun M, Ye Y, Xiao L, Duan X, Zhang Y et al. Anticancer effects of ginsenoside Rg3 (review). Int J Mol Med 2017; 39:507–518 [View Article] [PubMed]
    [Google Scholar]
  13. Eun H-J, Hwa S-D, Tae K-K, Dong P-H. Comparative study on anti-oxidative and anti-inflammatory properties of hydroponic ginseng and soil-cultured ginseng. Food Sci Biotechnol 2019; 28:215–224 [View Article] [PubMed]
    [Google Scholar]
  14. Song W, Wei L, Du Y, Wang Y, Jiang S. Protective effect of ginsenoside metabolite compound K against diabetic nephropathy by inhibiting NLRP3 inflammasome activation and NF-κB/p38 signaling pathway in high-fat diet/streptozotocin-induced diabetic mice. Int Immunopharmacol 2018; 63:227–238 [View Article] [PubMed]
    [Google Scholar]
  15. Chopra P, Chhillar H, Kim Y-J, Jo IH, Kim ST et al. Phytochemistry of ginsenosides: recent advancements and emerging roles. Crit Rev Food Sci Nutr 2023; 63:613–640 [View Article] [PubMed]
    [Google Scholar]
  16. Fu Y, Yin Z-H, Yin C-Y. Biotransformation of ginsenoside Rb1 to ginsenoside Rg3 by endophytic bacterium Burkholderia sp. GE 17-7 isolated from Panax ginseng. J Appl Microbiol 2017; 122:1579–1585 [View Article] [PubMed]
    [Google Scholar]
  17. Palaniyandi SA, Son BM, Damodharan K, Suh J-W, Yang SH. Fermentative transformation of ginsenoside Rb1 from Panax ginseng C. A. Meyer to Rg3 and Rh2 by Lactobacillus paracasei subsp. tolerans MJM60396. Biotechnol Bioproc E 2016; 21:587–594 [View Article] [PubMed]
    [Google Scholar]
  18. Bae EA, Shin JE, Kim DH. Metabolism of ginsenoside Re by human intestinal microflora and its estrogenic effect. Biol Pharm Bull 2005; 28:1903–1908 [View Article] [PubMed]
    [Google Scholar]
  19. Shin H, Park S, Sung JH, Kim D-H. Purification and characterization of alpha-L-arabinopyranosidase and alpha-L-arabinofuranosidase from Bifidobacterium breve K-110, a human intestinal anaerobic bacterium metabolizing ginsenoside Rb2 and Rc. Appl Environ Microbiol 2003; 69:7116–7123 [View Article] [PubMed]
    [Google Scholar]
  20. Kim YS, Kim DY, Kang DW, Park CS. Hydrolysis of the outer beta-(1,2)-D-glucose linkage at the C-3 position of ginsenosides by a commercial beta-galactosidase and its use in the production of minor ginsenosides. Biocatal Biotransfor 2019; 1:37
    [Google Scholar]
  21. Zhong FL, Ma R, Jiang M, Dong W-W, Jiang J et al. Cloning and characterization of ginsenoside-hydrolyzing β-glucosidase from Lactobacillus brevis that transforms ginsenosides Rb1 and F2 into ginsenoside Rd and compound K. J Microbiol Biotechnol 2016; 26:1661–1667 [View Article] [PubMed]
    [Google Scholar]
  22. Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol 2021; 38:3022–3027 [View Article]
    [Google Scholar]
  23. Chun J, Lee I, Ouk Kim Y, Park S-C. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2015; 66:1100–1103 [View Article] [PubMed]
    [Google Scholar]
  24. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  25. Rodriguez-R LM, Konstantinidis KT. The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprintse1900v1 2016; 4: [View Article]
    [Google Scholar]
  26. Gonzalez C, Gutierrez C, Ramirez C. Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 1978; 24:710–715 [View Article] [PubMed]
    [Google Scholar]
  27. Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 1974; 28:226–231 [View Article] [PubMed]
    [Google Scholar]
  28. Tang SK, Wang Y, Chen Y, Lou K, Cao L-L et al. Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 2009; 59:2025–2031 [View Article]
    [Google Scholar]
  29. Minnikin DE, Donnell AGO, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  30. Hu HY, Lim BR, Goto N, Fujie K. Analytical precision and repeatability of respiratory quinones for quantitative study of microbial community structure in environmental samples. J Microbiol Methods 2001; 4:17–24 [View Article] [PubMed]
    [Google Scholar]
  31. Sasser M. Midi Technical Note 101. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids Newark: MIDI; 1990 pp 1–7
    [Google Scholar]
  32. Cui CH, Liu Q-M, Kim J-K, Sung B-H, Kim S-G et al. Identification and characterization of a Mucilaginibacter sp. strain QM49 β-glucosidase and its use in the production of the pharmaceutically active minor ginsenosides (S)-rh1 and (S)-rg2. Appl Environ Microbiol 2013; 79:5788–5798 [View Article] [PubMed]
    [Google Scholar]
  33. Hong M-R, Kim Y-S, Park C-S, Lee J-K, Kim Y-S et al. Characterization of a recombinant β-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus. J Biosci Bioeng 2009; 108:36–40 [View Article] [PubMed]
    [Google Scholar]
  34. Hariharan J, Choudoir MJ, Diebold P, Panke-Buisse K, Buckley DH. Streptomyces apricus sp. nov., isolated from soil. Int J Syst Evol Microbiol 2022; 72:005178 [View Article]
    [Google Scholar]
  35. Li K, Man Y, Liu J, Liu Z, Ma H et al. Streptomyces liliifuscus sp. nov and an anti-ginger plague agent Streptomyces liliiviolaceus sp. nov, two novel species isolated from soil of Lilium lancifolium. Int J Syst Evol Microbiol 2022; 72:005340 [View Article] [PubMed]
    [Google Scholar]
  36. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article] [PubMed]
    [Google Scholar]
  37. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article] [PubMed]
    [Google Scholar]
  38. Pridham TG, Hesseltine CW, Benedict RG. A guide for the classification of Streptomycetes according to selected groups; placement of strains in morphological sections. Appl Microbiol 1958; 6:52–79 [View Article] [PubMed]
    [Google Scholar]
  39. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  40. Mao X, Hong Y, Shao Z, Zhao Y, Liu Z. A novel cold-active and alkali-stable β-glucosidase gene isolated from the marine bacterium Martelella mediterranea. Appl Biochem Biotechnol 2010; 162:2136–2148 [View Article] [PubMed]
    [Google Scholar]
  41. Zhang P, Zhang R, Sirisena S, Gan R, Fang Z. Beta-glucosidase activity of wine yeasts and its impacts on wine volatiles and phenolics: a mini-review. Food Microbiol 2021; 100:103859 [View Article] [PubMed]
    [Google Scholar]
  42. Burg BVD. Extremophiles as a source for novel enzymes. Curr Opin Microbiol 2003; 6:213–218 [View Article] [PubMed]
    [Google Scholar]
  43. Sun J, Wang W, Yao C, Dai F, Zhu X et al. Overexpression and characterization of a novel cold-adapted and salt-tolerant GH1 β-glucosidase from the marine bacterium Alteromonas sp. L82. J Microbiol 2018; 56:656–664 [View Article] [PubMed]
    [Google Scholar]
  44. Mateo JJ. Physico-chemical characterization of an exocellular sugars tolerant β-glucosidase from grape Metschnikowia pulcherrima isolates. Microorganisms 2023; 11:964 [View Article] [PubMed]
    [Google Scholar]
/content/journal/ijsem/10.1099/ijsem.0.006392
Loading
/content/journal/ijsem/10.1099/ijsem.0.006392
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error