Skip to content
1887

Abstract

A Gram-negative, facultative anaerobic, non-motile and rod-shaped bacterium, designated 10c7w1, was isolated from a human gastrointestinal tract. Colonies on agar plates were small, circular, smooth and beige. The optimal growth conditions were determined to be 37 °C, pH 7.0–7.5 and 0 % (w/v) NaCl. Comparative analysis of complete 16S rRNA gene sequences revealed that strain 10c7w1 showed the highest sequence similarity of 95.8 % to MCCC 1A01410, followed by (95.2 %) JCM 11629. The average amino acid identity values between 10c7w1 and MCCC 1A01410 and JCM 11629 were above 60 % (71.4 and 69.5 %). The average nucleotide identity values between strain 10c7w1 and MCCC 1A01410 and JCM 11629 were 76.9 and 72.5 %, respectively. The dominant fatty acids (≥10 %) were straight chain ones, with summed feature 3 (C 7/C 6), summed feature 8 (C 7/C 6) and C being the most abundant. Q-8 was the only respiratory quinone. The major polar lipids of strain 10c7w1 were phosphatidylethanolamine, diphosphatidylglycerol and unknown lipids. The DNA G+C content of strain 10c7w1 was 63.6 mol%. On the basis of phylogenetic, phenotypic and chemotaxonomic data, strain 10c7w1 is considered to represent a novel species within the genus , for which the name sp. nov. is proposed. The type strain is 10c7w1 (=MCCC 1H01399=KCTC 92200).

Funding
This study was supported by the:
  • Incubation Projects of Weihai Municipal Hospital (Award FH-2021-XZ02)
    • Principle Award Recipient: Ming-YiWang
  • Shandong Provincial Natural Science Foundation (Award ZR2021MH409)
    • Principle Award Recipient: Zong-JunDu
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006360
2024-05-10
2025-05-21
Loading full text...

Full text loading...

References

  1. Geng S, Pan X-C, Mei R, Wang Y-N, Sun J-Q et al. Ottowia shaoguanensis sp. nov., isolated from coking wastewater. Curr Microbiol 2014; 68:324–329 [View Article]
    [Google Scholar]
  2. Spring S, Jäckel U, Wagner M, Kämpfer P. Ottowia thiooxydans gen. nov., sp. nov., a novel facultatively anaerobic, N2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov. Int J Syst Evol Microbiol 2004; 54:99–106 [View Article] [PubMed]
    [Google Scholar]
  3. Cao J, Lai Q, Liu Y, Li G, Shao Z. Ottowia beijingensis sp. nov., isolated from coking wastewater activated sludge, and emended description of the genus Ottowia. Int J Syst Evol Microbiol 2014; 64:963–967 [View Article] [PubMed]
    [Google Scholar]
  4. Shi S-B, Li G-D, Yang L-F, Liu C, Jiang M-G et al. Ottowia flava sp. nov., isolated from fish intestines. Antonie van Leeuwenhoek 2019; 112:1567–1575 [View Article] [PubMed]
    [Google Scholar]
  5. Yi KJ, Im WT, Kim DW, Kim SK. Ottowia konkukae sp. nov., isolated from rotten biji (tofu residue). Int J Syst Evol Microbiol 2018; 68:3458–3462 [View Article] [PubMed]
    [Google Scholar]
  6. Busse H-J, Kämpfer P, Szostak MP, Spergser J. Ottowia testudinis sp. nov., isolated from the cloaca of a giant Asian pond turtle (Heosemys grandis). Int J Syst Evol Microbiol 2022; 72: [View Article]
    [Google Scholar]
  7. Heo J, Cho H, Hong S-B, Kim J-S, Kwon S-W et al. Ottowia oryzae sp. nov., isolated from Andong sikhye, a Korean traditional rice beverage. Int J Syst Evol Microbiol 2018; 68:3096–3100 [View Article] [PubMed]
    [Google Scholar]
  8. Bowman JP. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 2000; 50 Pt 5:1861–1868 [View Article] [PubMed]
    [Google Scholar]
  9. Cowan ST SK Bacterial Characters and Characterization, 2nd. edn Cambridge, UK: Cambridge University Press; 1974
    [Google Scholar]
  10. Dong XZ, Cai MY. Determination of biochemical characteristics. In Manual for the Systematic Identification of General Bacteria Science Press; 2001 pp 370–398
    [Google Scholar]
  11. Clinical and Laboratory Standards Institute Performance Standards for Antimicrobial Susceptibility Testing. Twenty-Second Informational Supplement CLSI Document M100–S22 Clinical and Laboratory Standards Institute; 2012
    [Google Scholar]
  12. Liu QQ, Wang Y, Li J, Du ZJ, Chen GJ. Saccharicrinis carchari sp. nov., isolated from a shark, and emended descriptions of the genus Saccharicrinis and Saccharicrinis fermentans. Int J Syst Evol Microbiol 2014; 64:2204–2209 [View Article] [PubMed]
    [Google Scholar]
  13. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article] [PubMed]
    [Google Scholar]
  14. Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol 2021; 38:3022–3027 [View Article] [PubMed]
    [Google Scholar]
  15. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article] [PubMed]
    [Google Scholar]
  16. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Soc Study Evol 1985; 39:783–791 [View Article]
    [Google Scholar]
  17. Li RQ, Li YR, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008; 24:713–714 [View Article]
    [Google Scholar]
  18. Li R, Zhu H, Ruan J, Qian W, Fang X et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010; 20:265–272 [View Article] [PubMed]
    [Google Scholar]
  19. Kanehisa M, Sato Y, Morishima K. BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J Mol Biol 2016; 428:726–731 [View Article] [PubMed]
    [Google Scholar]
  20. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics 2008; 9:75 [View Article] [PubMed]
    [Google Scholar]
  21. Huerta-Cepas J, Forslund K, Coelho LP, Szklarczyk D, Jensen LJ et al. Fast genome-wide functional annotation through orthology assignment by eggNOG-Mapper. Mol Biol Evol 2017; 34:2115–2122 [View Article] [PubMed]
    [Google Scholar]
  22. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  23. Kroppenstedt RM. Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liquid Chromatogr 1982; 5:2359–2367 [View Article]
    [Google Scholar]
  24. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. In MIDI Technical Note 101 Newark, DE: MIDI inc; 1990
    [Google Scholar]
  25. Tindall BJ, Sikorski J, Smibert RA. Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology Wiley; 2007 pp 330–393 [View Article]
    [Google Scholar]
  26. Chaumeil PA, Mussig AJ, Hugenholtz P, Parks DH. GTDB-Tk: a toolkit to classify genomes with the genome taxonomy database. Bioinformatics 2019; 36:1925–1927 [View Article] [PubMed]
    [Google Scholar]
  27. Price MN, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One 2010; 5:e9490 [View Article] [PubMed]
    [Google Scholar]
  28. Trifinopoulos J, Nguyen L-T, von Haeseler A, Minh BQ. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res 2016; 44:W232–5 [View Article] [PubMed]
    [Google Scholar]
  29. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article] [PubMed]
    [Google Scholar]
  30. Auch AF, von Jan M, Klenk H-P, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010; 2:117–134 [View Article] [PubMed]
    [Google Scholar]
/content/journal/ijsem/10.1099/ijsem.0.006360
Loading
/content/journal/ijsem/10.1099/ijsem.0.006360
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error