Elevation of Lentilactobacillus rapi subsp. dabitei Li et al. 2022 to the species level as Lentilactobacillus dabitei sp. nov.

References

1. Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Ohkuma M et al. Lentilactobacillus fungorum sp. nov., isolated from spent mushroom substrates. Int J Syst Evol Microbiol 2021; 71:005184 [View Article] [PubMed]
   [Google Scholar]
2. Chiou T-Y, Suda W, Oshima K, Hattori M, Matsuzaki C et al. Lentilactobacillus kosonis sp. nov., isolated from kôso, a Japanese sugar-vegetable fermented beverage. Int J Syst Evol Microbiol 2021; 71:005128 [View Article] [PubMed]
   [Google Scholar]
3. Bai L, Paek J, Shin Y, Park H-Y, Chang YH. Lentilactobacillus kribbianus sp. nov., isolated from the small intestine of a mini pig. Int J Syst Evol Microbiol 2020; 70:6476–6481 [View Article] [PubMed]
   [Google Scholar]
4. Zhao Q, Yang S, Bao G, Wang W, Miao L et al. Lentilactobacillus laojiaonis sp. nov., isolated from the mud in a fermentation cellar for the production of Chinese liquor. Int J Syst Evol Microbiol 2022; 72:005349 [View Article] [PubMed]
   [Google Scholar]
5. Li Y, Li W, Luo R, Sakandar HA, Zhang H et al. Lentilactobacillus rapi subsp. dabitei subsp. nov., a lactic acid bacterium isolated from naturally fermented dairy product. Int J Syst Evol Microbiol 2022; 72:005359 [View Article] [PubMed]
   [Google Scholar]
6. Mattarelli P, Holzapfel W, Franz C, Endo A, Felis GE et al. Recommended minimal standards for description of new taxa of the genera Bifidobacterium, Lactobacillus and related genera. Int J Syst Evol Microbiol 2014; 64:1434–1451 [View Article] [PubMed]
   [Google Scholar]
7. Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R et al. The PATRIC bioinformatics resource center: expanding data and analysis capabilities. Nucleic Acids Res 2020; 48:D606–D612 [View Article] [PubMed]
   [Google Scholar]
8. Lee I, Ouk Kim Y, Park S-C, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article] [PubMed]
   [Google Scholar]
9. Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1281–1286 [View Article] [PubMed]
   [Google Scholar]
10. Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 2016; 32:929–931 [View Article] [PubMed]
    [Google Scholar]
11. Auch AF, von Jan M, Klenk H-P, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010; 2:117–134 [View Article] [PubMed]
    [Google Scholar]
12. Besemer J, Lomsadze A, Borodovsky M. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 2001; 29:2607–2618 [View Article] [PubMed]
    [Google Scholar]
13. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article] [PubMed]
    [Google Scholar]
14. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article] [PubMed]
    [Google Scholar]
15. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article] [PubMed]
    [Google Scholar]
16. Stackebrandt E, Goebel BM. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Evol Microbiol 1994; 44:846–849 [View Article]
    [Google Scholar]
17. Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. J Bacteriol 2005; 187:6258–6264 [View Article] [PubMed]
    [Google Scholar]
18. Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 2015; 25:1043–1055 [View Article] [PubMed]
    [Google Scholar]
19. Li TT, Liu DD, Fu ML, Gu CT. Proposal of Lactobacillus kosoi Chiou et al. 2018 as a later heterotypic synonym of Lactobacillus micheneri Mcfrederick et al. 2018, elevation of Lactobacillus plantarum subsp. Argentoratensis to the species level as Lactobacillus argentoratensis sp. nov., and Lactobacillus zhaodongensis sp. nov., isolated from traditional Chinese pickle and the intestinal tract of a honey bee (Apis Mellifera). Int J Syst Evol Microbiol 2020; 70:3123–3133
    [Google Scholar]
20. Gao JL, Sun JG, Li Y, Wang ET, Chen WX. Numerical taxonomy and DNA relatedness of tropical rhizobia Isolated from hainan province, China. Int J Syst Evol Microbiol 1994; 44:151–158 [View Article]
    [Google Scholar]
21. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. In MIDI Technical Note vol 101 Newark, DE, USA: Microbial ID Inc; 1990
    [Google Scholar]