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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 73, Issue 8

Genome-wide and constrained ordination-based analyses of EC code data support reclassification of the species of La Scola . 2000 into Bowman . 1993, gen. nov. and gen. nov. Open Access

Abstract

Based on genome-wide data, species belonging to the clade including LMG 11547 should be entirely transferred to the genus owing to the nomenclatural priority of the type species . This results in the transfer of 35 species to the genus . The presented data also supports the creation of two new genera since peripherally branching species are distinct from and other related genera. It is proposed that 13 species are transferred to gen. nov. with the type species designated comb. nov. The species is proposed to belong to the genus gen. nov. as the type species comb. nov. The genome-wide analysis was well supported by canonical ordination analysis of Enzyme Commission (EC) codes annotated from genomes via 2. This new approach was performed to assess the conclusions of the genome-based data and reduce possible ambiguity in the taxonomic decision making. Cross-validation of EC code data compared within canonical plots validated the reclassifications and correctly visualized the expected genus-level taxonomic relationships. The approach is complementary to genome-wide methodology and could be used for testing sequence alignment based data across genetically related genera. In addition to the proposed broader reclassifications, invalidly described species ‘’, ‘’, ‘’ and ‘’ are described as sp. nov., sp. nov., sp. nov. and sp. nov., respectively. In addition, is reclassified as comb. nov. The use of combined genome-wide and annotation descriptors compared using canonical ordination clarifies the taxonomy of and its sibling genera and provides another way to evaluate complex taxonomic data.

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): CAzymes , constrained ordination , EC codes , Massilia , Pseudoduganella and Telluria
© 2023 The Authors
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
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2023-08-17
2024-09-19
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Genome-wide and constrained ordination-based analyses of EC code data support reclassification of the species of Massilia La Scola et al. 2000 into Telluria Bowman et al. 1993, Mokoshia gen. nov. and Zemynaea gen. nov.
Int J Syst Evol Microbiol 73, 005991 (2023); https://doi.org/10.1099/ijsem.0.005991
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