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Abstract

Two Gram-stain-negative, aerobic, non-motile and rod-shaped bacterial strains designated 3A5MI-3 and RSS-23 were isolated from the Dragon-shaped Wetland System in Beijing Olympic Park, PR China. Strain 3A5MI-3 grew at 15–45 °C, pH 5.0–9.0 and with 0–2 % NaCl (w/v), and strain RSS-23 grew at 15-40 C, pH 5.5–9.0 and with 0–1 % NaCl (w/v). Phylogenetic analyses of 16S rRNA gene sequences revealed that strains 3A5MI-3 and RSS-23 were members of and , respectively. Phylogenetically closest relatives of strains 3A5MI-3 and RSS-23 were R384 and SY21, respectively. The cells of strain 3A5MI-3 contained menaquinone MK-7 and phosphatidylethanolamine, and the major cellular fatty acids were composed of iso-C, iso-C ω6 and/or iso-C ω7, iso-C 3-OH, C and summed feature 3 (C ω7/C ω6). Strain RSS-23 contained ubiquinone Q-8 and diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unknown phospholipids and an unknown lipid, and its major cellular fatty acids were iso-C, iso-C ω9, iso-C 3-OH and summed feature 3 (C ω7/C ω6). DNA sequencing resulted in 6.59 Mb for the strain 3A5MI-3 genome and 2.79 Mb for the strain RSS-23 genome. The calculated G+C molar contents for strains 3A5MI-3 and RSS-23 were 47.07 and 61.21 mol%, respectively. According to phenotypic and phylogenetic characteristics, strains 3A5MI-3 and RSS-23 represent novel species of the genera and for which the names sp. nov. and sp. nov. are proposed. The type strain for sp. nov. is 3A5MI-3 (=CGMCC 1.17737=KCTC 82817). The type strain for sp. nov. is RSS-23 (=CGMCC 1.17738=KCTC 82820).

Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award Grant No. 31861133002)
    • Principle Award Recipient: Shuang-JiangLiu
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
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2022-03-22
2025-04-22
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References

  1. Guo S-Z, Wu T, Zhu H-Z, Yan L, Liu Z et al. Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland. Figshare 2022. 10.6084/m9.figshare.18220907.v1
    [Google Scholar]
  2. Siddiqi MZ, Im WT. Niabella aquatica sp. nov., isolated from lake water. Int J Syst Evol Microbiol 2016; 66:2774–2779 [View Article] [PubMed]
    [Google Scholar]
  3. Weon H-Y, Yoo S-H, Kim B-Y, Son J-A, Kim Y-J et al. Niabella ginsengisoli sp. nov., isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 2009; 59:1282–1285 [View Article] [PubMed]
    [Google Scholar]
  4. Ju J-H, Kim J-S, Lee D-H, Jeon JH, Heo S-Y et al. Thermomonas aquatica sp. nov., isolated from an industrial wastewater treatment plant. Int J Syst Evol Microbiol 2019; 69:3399–3404 [View Article] [PubMed]
    [Google Scholar]
  5. Kim MK, Im WT, In JG, Kim SH, Yang DC. Thermomonas koreensis sp. nov., a mesophilic bacterium isolated from a ginseng field. Int J Syst Evol Microbiol 2006; 56:1615–1619 [View Article] [PubMed]
    [Google Scholar]
  6. Kim B-Y, Weon H-Y, Yoo S-H, Hong S-B, Kwon S-W et al. Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea. Int J Syst Evol Microbiol 2007; 57:538–541 [View Article]
    [Google Scholar]
  7. Dai J, Jiang F, Wang Y, Yu B, Qi H et al. Niabella tibetensis sp. nov., isolated from soil, and emended description of the genus Niabella. Int J Syst Evol Microbiol 2011; 61:1201–1205 [View Article] [PubMed]
    [Google Scholar]
  8. Dahal RH, Kim J. Niabellapedocola sp. nov., isolated from soil. Int J Syst Evol Microbiol 2016; 66:2650–2656 [View Article] [PubMed]
    [Google Scholar]
  9. Glaeser SP, Galatis H, Martin K, Kämpfer P. Niabella hirudinis and Niabella drilacis sp. nov., isolated from the medicinal leech Hirudo verbana. Int J Syst Evol Microbiol 2013; 63:3487–3493 [View Article] [PubMed]
    [Google Scholar]
  10. Ngo HTT, Trinh H, Yan Z-F, Moya G, Kook M et al. Niabella hibiscisoli sp. nov., isolated from soil of a rose of Sharon garden. Int J Syst Evol Microbiol 2017; 67:784–788 [View Article] [PubMed]
    [Google Scholar]
  11. Wang H, Zhang YZ, Man CX, Chen WF, Sui XH et al. Niabella yanshanensis sp. nov., isolated from the soybean rhizosphere. Int J Syst Evol Microbiol 2009; 59:2854–2856 [View Article] [PubMed]
    [Google Scholar]
  12. Weon H-Y, Kim B-Y, Joa J-H, Kwon S-W, Kim W-G et al. Niabella soli sp. nov., isolated from soil from Jeju Island, Korea. Int J Syst Evol Microbiol 2008; 58:467–469 [View Article] [PubMed]
    [Google Scholar]
  13. Yi KJ, Im WT, Kim DW, Liu QM, Kim SK. Niabella ginsenosidivorans sp. nov., isolated from compost. J Microbiol 2015; 53:762–766 [View Article] [PubMed]
    [Google Scholar]
  14. Ahn J-H, Jo E-H, Kim B-Y, Song J, Kwon S-W et al. Niabella terrae sp. nov. isolated from greenhouse soil. J Microbiol 2013; 51:731–735 [View Article]
    [Google Scholar]
  15. Pham VHT, Kim J. Niabella thaonhiensis sp. nov., isolated from the forest soil of Kyonggi University in Korea. Curr Microbiol 2014; 69:176–181 [View Article] [PubMed]
    [Google Scholar]
  16. Busse HJ, Kämpfer P, Moore ERB, Nuutinen J, Tsitko IV et al. Thermomonas haemolytica gen. nov., sp. nov., a gamma-proteobacterium from kaolin slurry. Int J Syst Evol Microbiol 2002; 52:473–483 [View Article]
    [Google Scholar]
  17. Wang L, Zheng S, Wang D, Wang L, Wang G. Thermomonas carbonis sp. nov., isolated from the soil of a coal mine. Int J Syst Evol Microbiol 2014; 64:3631–3635 [View Article] [PubMed]
    [Google Scholar]
  18. Mergaert J, Cnockaert MC, Swings J. Thermomonas fusca sp. nov. and Thermomonas brevis sp. nov., two mesophilic species isolated from a denitrification reactor with poly(epsilon-caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas. Int J Syst Evol Microbiol 2003; 53:1961–1966 [View Article] [PubMed]
    [Google Scholar]
  19. Alves MP, Rainey FA, Nobre MF, da Costa MS. Thermomonas hydrothermalis sp. nov., a new slightly thermophilic gamma-proteobacterium isolated from a hot spring in central Portugal. Syst Appl Microbiol 2003; 26:70–75 [View Article] [PubMed]
    [Google Scholar]
  20. Sakamoto M, Hayashi H, Benno Y. Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities. Microbiol Immunol 2003; 47:133–142 [View Article] [PubMed]
    [Google Scholar]
  21. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673–4680 [View Article] [PubMed]
    [Google Scholar]
  22. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article] [PubMed]
    [Google Scholar]
  23. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article] [PubMed]
    [Google Scholar]
  24. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 1971; 20:406 [View Article]
    [Google Scholar]
  25. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article] [PubMed]
    [Google Scholar]
  26. Zuo G. CVTree: A parallel alignment-free phylogeny and taxonomy tool based on composition vectors of gParallel Alignment-free Phylogeny and Taxonomy Tool based on Composition Vectors of Genomes. Genomics Proteomics Bioinformatics 2021; 19:1–6 [View Article] [PubMed]
    [Google Scholar]
  27. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article] [PubMed]
    [Google Scholar]
  28. Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie vVan Leeuwenhoek 2017; 110:1281–1286 [View Article] [PubMed]
    [Google Scholar]
  29. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  30. Thompson CC, Chimetto L, Edwards RA, Swings J, Stackebrandt E et al. Microbial genomic taxonomy. BMC Genomics 2013; 14:913 [View Article] [PubMed]
    [Google Scholar]
  31. Hucker GJ. A new modification and application of the Gram stain. J Bacteriol 1921; 6:395–397 [View Article] [PubMed]
    [Google Scholar]
  32. Kovacs N. Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 1956; 178:703 [View Article] [PubMed]
    [Google Scholar]
  33. Sasser M. MIDI Technical Note 101. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI; 1990
  34. Collins MD, Jones D, Goodfellow M, Minnikin DE. Isoprenoid quinone composition as a guide to the classification of Listeria, Brochothrix, Erysipelothrix and Caryophanon. J Gen Microbiol 1979; 111:453–457 [View Article] [PubMed]
    [Google Scholar]
  35. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  36. Yassin AF, Chen W-M, Hupfer H, Siering C, Kroppenstedt RM et al. Lysobacter defluvii sp. nov., isolated from municipal solid waste. Int J Syst Evol Microbiol 2007; 57:1131–1136 [View Article] [PubMed]
    [Google Scholar]
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