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Volume 71, Issue 10

Taxonomic note on the family based on phylogenomic analysis and descriptions of gen. nov. and gen. nov No Access

Abstract

The taxonomic positions of members within the family were assessed based on phylogenomic trees reconstructed using core-proteome and genome distance phylogeny approaches. The closely clustered genome sequences from the type strains of validly published names within the family were analysed using overall genome-related indices based on average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization values. The family consists of the type genus , as well as the genera , , , , , , , , , gen. nov., , , , , , , , , gen. nov., , , , , , , , , , , , , , , , and . The G+C contents of the genomes ranged from 66.2 to 74.6 mol% and genome sizes ranged from 3.69 to 12.28 Mbp. Based on the results of phylogenomic analysis, the names comb. nov., comb. nov. and comb. nov. are proposed. This study revealed that is a heterotypic synonym of , is a heterotypic synonym of , is a heterotypic synonym of , and and are heterotypic synonyms of . This study addresses the nomenclature conundrums of and as well as and .

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): average nucleotide identity (ANI) , digital DNA–DNA hybridization (dDDH) , overall genome-related index (OGRI) and Pseudonocardiaceae
Funding
This study was supported by the:
  • Universiti Malaya Research University Grant (Award ST003-2021)
    • Principle Award Recipient: Fei Aaron TeoWee
  • Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) (Award No.311021006)
    • Principle Award Recipient: LiWen-Jun
© 2021 The Authors
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2021-10-29
2024-04-23
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Taxonomic note on the family Pseudonocardiaceae based on phylogenomic analysis and descriptions of Allosaccharopolyspora gen. nov. and Halosaccharopolyspora gen. nov
Int J Syst Evol Microbiol 71, 005075 (2021); https://doi.org/10.1099/ijsem.0.005075
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