gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed family within the order Rhizobiales Open Access

Abstract

We isolated a novel strain, R1DC25, described as gen. nov. sp. nov. from the sediments of a mangrove forest on the coast of the Red Sea in Saudi Arabia. This isolate is a moderately halophilic, aerobic/facultatively anaerobic Gram-stain-negative bacterium showing optimum growth at between 30 and 40 °C, at a pH of 8.5 and with 3–5 % NaCl. The genome of R1DC25 comprises a circular chromosome that is 4 630 536 bp in length, with a DNA G+C content of 67.3 mol%. Phylogenetic analyses based on the 16S rRNA gene sequence and whole-genome multilocus sequence analysis of 120 concatenated single-copy genes revealed that R1DC25 represents a distinct lineage within the family in the order within the class . R1DC25 showing 95.8, 95.3 and 94.5 % 16S rRNA gene sequence identity with , and , respectively. The predominant quinone was Q-10, and the polar lipids were phosphatidylglycerol, phosphatidylcholine, diphosphatidylglycerol, as well as several distinct aminolipids and lipids. The predominant cellular fatty acids were C cyclo 8, a combination of C 7 and/or C 6 and C. On the basis of the differences in the phenotypic, physiological and biochemical characteristics from its known relatives and the results of our phylogenetic analyses, R1DC25 (=KCTC 72348;=JCM 33619;=NCCB 100699) is proposed to represent a novel species in a novel genus, and we propose the name gen. nov., sp. nov. ( subjective name derived from the abbreviation KAUST for King Abdullah University of Science and Technology; , of a mangrove).

Funding
This study was supported by the:
  • King Abdullah University of Science and Technology (Award CRG-7-3739)
    • Principle Award Recipient: DanieleDaffonchio
  • King Abdullah University of Science and Technology (Award REI/1/4483-01-01)
    • Principle Award Recipient: DanieleDaffonchio
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2021-05-17
2024-03-28
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