1887

Abstract

A strictly aerobic, bacteriochlorophyll (BChl) -containing alphaproteobacterium, designated strain K6, was isolated from seawater around an aquaculture site in the Uwa Sea in Japan. The novel strain grew optimally at 30 °C at pH 7.0–7.5 and in the presence of 2.0 % (w/v) NaCl. The nonmotile and coccoid or rod-shaped cells formed pink-pigmented colonies on agar plates containing organic compounds. Cells showed an absorption maximum at 870 nm in the near-infrared region, indicating the presence of BChl in the light-harvesting 1 complex. The new bacterial strain was Gram-stain-negative and oxidase- and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain K6 was closely related to species in the genus . The closest phylogenetic relatives of strain K6 were GJSW-31 (98.56 % sequence similarity), KMM 3842 (97.63 %) and KMM 3851 (96.88 %). The G+C content of the genomic DNA was 58.26 mol%. The average nucleotide identity value of strain K6 with the type strain of was 77.16 % (SD 4.79 %). The digital DNA−DNA hybridization value of strain K6 with the type strain of was 19.40 %. The respiratory quinone was ubiquinone-10. The major cellular fatty acids were C ω7, C and 11-methyl C ω7. The dominant polar lipids were phosphatidylcholine and phosphatidylglycerol. On the basis of the genetic and phenotypic data obtained in the present study, we propose a new species in the genus : sp. nov., whose type strain is K6 (=DSM 110109=NBRC 114114). Strain K6 represents the first confirmed species that produces BChl within the genus .

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2021-03-04
2024-04-25
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References

  1. Beatty JT. On the natural selection and evolution of the aerobic phototrophic bacteria. Photosynth Res 2002; 73:109–114 [View Article][PubMed]
    [Google Scholar]
  2. Kolber ZS, Plumley FG, Lang AS, Beatty JT, Blankenship RE et al. Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 2001; 292:2492–2495 [View Article][PubMed]
    [Google Scholar]
  3. Lami R, Cottrell MT, Ras J, Ulloa O, Obernosterer I et al. High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific Ocean. Appl Environ Microbiol 2007; 73:4198–4205 [View Article][PubMed]
    [Google Scholar]
  4. Stegman MR, Cottrell MT, Kirchman DL. Leucine incorporation by aerobic anoxygenic phototrophic bacteria in the Delaware estuary. Isme J 2014; 8:2339–2348 [View Article][PubMed]
    [Google Scholar]
  5. Ferrera I, Sánchez O, Kolářová E, Koblížek M, Gasol JM. Light enhances the growth rates of natural populations of aerobic anoxygenic phototrophic bacteria. Isme J 2017; 11:2391–2393 [View Article][PubMed]
    [Google Scholar]
  6. Sato-Takabe Y, Nakao H, Kataoka T, Yokokawa T, Hamasaki K et al. Abundance of common aerobic anoxygenic phototrophic bacteria in a coastal aquaculture area. Front Microbiol 2016; 7:1–10 [View Article]
    [Google Scholar]
  7. Romanenko LA, Tanaka N, Frolova GM, Svetashev VI, Mikhailov VV. Litoreibacter albidus gen. nov., sp. nov. and Litoreibacter janthinus sp. nov., members of the class Alphaproteobacteria isolated from the seashore. Int J Syst Evol Microbiol 2011; 61:148–154 [View Article][PubMed]
    [Google Scholar]
  8. Kim YO, Park S, Nam BH, Kang SJ, Hur YB et al. Description of Litoreibacter meonggei sp. nov., isolated from the sea squirt Halocynthia roretzi, reclassification of Thalassobacter arenae as Litoreibacter arenae comb. nov. and emended description of the genus Litoreibacter Romanenko et al. 2011. Int J Syst Evol Microbiol 2012; 62:1825–1831 [View Article][PubMed]
    [Google Scholar]
  9. Kim YO, Park S, Nam BH, Jung YT, Kim DG et al. Litoreibacter halocynthiae sp. nov., isolated from the sea squirt Halocynthia roretzi . Int J Syst Evol Microbiol 2013; 63:3364–3368 [View Article][PubMed]
    [Google Scholar]
  10. Kim YO, Park IS, Nam B-H, Park J-M, Kim D-G et al. Litoreibacter ascidiaceicola sp. nov., isolated from the golden sea squirt Halocynthia aurantium . Int J Syst Evol Microbiol 2014; 64:2545–2550 [View Article][PubMed]
    [Google Scholar]
  11. Park S, Park J-M, Park D-S, Yoon J-H. Litoreibacter ponti sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2014; 64:3810–3815 [View Article][PubMed]
    [Google Scholar]
  12. Koblížek M. Ecology of aerobic anoxygenic phototrophs in aquatic environments. FEMS Microbiol Rev 2015; 39:854–870 [View Article][PubMed]
    [Google Scholar]
  13. ZoBell CE. Studies on marine bacteria I. The cultural requirements of heterotrophic aerobes. J Mar Res 1941; 4:41–75
    [Google Scholar]
  14. Hirose S, Matsuura K, Haruta S. Phylogenetically diverse aerobic anoxygenic phototrophic bacteria isolated from epilithic biofilms in TamA river, Japan. Microbes Environ 2016; 31:299–306 [View Article][PubMed]
    [Google Scholar]
  15. Kumar S, Stecher G, Tamura K. mega7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed]
    [Google Scholar]
  16. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  17. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article][PubMed]
    [Google Scholar]
  18. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783 [View Article][PubMed]
    [Google Scholar]
  19. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article][PubMed]
    [Google Scholar]
  20. Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 2014; 30:2068–2069 [View Article][PubMed]
    [Google Scholar]
  21. Leifson E. Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 1963; 85:1183–1184 [View Article][PubMed]
    [Google Scholar]
  22. Bauer AW, Kirby WM, Sherris JC, Turck M. Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 1966; 45:493–496 [View Article][PubMed]
    [Google Scholar]
  23. Hanada S, Takaichi S, Matsuura K, Nakamura K. Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. Int J Syst Evol Microbiol 2002; 52:187–193 [View Article][PubMed]
    [Google Scholar]
  24. Hamada M, Iino T, Iwami T, Harayama S, Tamura T et al. Mobilicoccus pelagius gen. nov., sp. nov. and Piscicoccus intestinalis gen. nov., sp. nov., two new members of the family Dermatophilaceae, and reclassification of Dermatophilus chelonae (masters et al. 1995) as Austwickia chelonae gen. nov., comb. nov. J Gen Appl Microbiol 2010; 56:427–436 [View Article][PubMed]
    [Google Scholar]
  25. Takaichi S, Shimada K. Characterization of carotenoids in photosynthetic bacteria. Meth Enzymol 1992; 213:374–385
    [Google Scholar]
  26. Rodriguez-R LM, Konstantinidis KT. Bypassing cultivation to identify bacterial species. Microbe 2014; 9:111–118 [View Article]
    [Google Scholar]
  27. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
  28. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article][PubMed]
    [Google Scholar]
  29. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article][PubMed]
    [Google Scholar]
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