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Abstract

A Gram-negative, dark orange-pigmented, aerobic, non-spore-forming, coccoid-shaped bacterium designated as ZS-1/3 was isolated from a floating plastic litter (polypropylene straw) sample, collected from shallow seawater near the public beach of Laganas on Zakynthos island, Greece. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate is affiliated with the genus in the family . Its closest relatives are (98.09  %) and (95.89  %). The pH and temperature ranges for growth are pH 5–10 and 20–38 °C (optima, pH 7.0 and 28 °C). The predominant fatty acids are C 7 (56.84  %), C (27.51  %), C (2.25  %) and C (1.42  %). The predominant respiratory quinone detected in strain ZS-1/3 is quinone-10 (Q10); the majority of detected polar lipids are glycolipid. The DNA G+C content is 62.5  mol%. Physiological and chemotaxonomic data further confirmed the distinctiveness of strain ZS-1/3 from other members of the genus . Thus, strain ZS-1/3 is considered to represent a novel species of the genus, for which the name . sp. nov. is proposed. The type strain is ZS-1/3 (=NCAIM B 02654=CCM 9032).

Funding
This study was supported by the:
  • Emberi Eroforrások Minisztériuma (Award UNKP-18-4-SZIE-18)
    • Principle Award Recipient: IstvánSzabó
  • Ministry for Innovation and Technology of Hungary (Award NKFIH-831-10/2019)
    • Principle Award Recipient: ApplicableNot
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2020-12-09
2024-04-25
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References

  1. Cho JC, Giovannoni SJ. Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria. Int J Syst Evol Microbiol 2003; 53:1031–1036 [View Article]
    [Google Scholar]
  2. Zhang X-Q, Wu Y-H, Zhou X, Zhang X, Xu X-W et al. Parvularcula flava sp. nov., an alphaproteobacterium isolated from surface seawater of the South China Sea. Int J Syst Evol Microbiol 2016; 66:3498–3502 [View Article]
    [Google Scholar]
  3. Arun AB, Chen W, Lai W, Chou J, Rekha PD et al. Parvularcula lutaonensis sp. nov., a moderately thermotolerant marine bacterium isolated from a coastal hot spring. Int J Syst Evol Microbiol 2009; 59:998–1001 [View Article]
    [Google Scholar]
  4. Yu Z, Lai Q, Li G, Shao Z. Parvularcula dongshanensis sp. nov., isolated from soft coral. Int J Syst Evol Microbiol 2013; 63:2114–2117 [View Article]
    [Google Scholar]
  5. Li S, Tang K, Liu K, Yu C-P, Jiao N. Parvularcula oceanus sp. nov., isolated from deep-sea water of the southeastern Pacific Ocean. Antonie van Leeuwenhoek 2014; 105:245–251 [View Article]
    [Google Scholar]
  6. Sun LL, Dang YR, Li Y, Qin QL, Su H-N et al. Parvularcula marina sp. nov., isolated from surface water of the South China Sea, and emended description of the genus Parvularcula. Int J Syst Evol Microbiol 2019; 69:2571–2576 [View Article]
    [Google Scholar]
  7. Kallscheuer N, Jogler M, Wiegand S, Peeters SH, Heuer A et al. Three novel Rubripirellula species isolated from plastic particles submerged in the Baltic sea and the estuary of the river Warnow in northern Germany. Antonie van Leeuwenhoek 2019; 127: [View Article]
    [Google Scholar]
  8. Peeters SH, Wiegand S, Kallscheuer N, Jogler M, Heuer A et al. Description of Polystyrenella longa gen. nov., sp. nov., isolated from polystyrene particles incubated in the Baltic sea. Antonie van Leeuwenhoek 2020; 5: 01 Apr 2020 [View Article][PubMed]
    [Google Scholar]
  9. Zettler ER, Mincer TJ, Amaral-Zettler LA. Life in the "plastisphere": microbial communities on plastic marine debris. Environ Sci Technol 2013; 47:7137–7146 p [View Article][PubMed]
    [Google Scholar]
  10. Lane D. 16S/23S rRNA Sequencing. In Stackebrandt E, Goodfellow M. (editors) Nucleic Acid Techniques in Bacterial Systematics new york: John Wiley and Sons; 1991 pp 115–175
    [Google Scholar]
  11. Kim O-S, Cho Y-J, Lee K, Yoon S-H, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  12. Thompson J, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article]
    [Google Scholar]
  13. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article]
    [Google Scholar]
  14. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  15. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article]
    [Google Scholar]
  16. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. mega X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article]
    [Google Scholar]
  17. Borsodi AK, Aszalós JM, Bihari P, Nagy I, Schumann P et al. Anaerobacillus alkaliphilus sp. nov., a novel alkaliphilic and moderately halophilic bacterium. Int J Syst Evol Microbiol 2019; 69:631–637 [View Article]
    [Google Scholar]
  18. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP et al. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 2016; 44:6614–6624 [View Article]
    [Google Scholar]
  19. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article]
    [Google Scholar]
  20. Lee I, Ouk Kim Y, Park S-C, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article]
    [Google Scholar]
  21. Krizova L, Maixnerova M, Sedo O, Nemec A. Acinetobacter bohemicus sp. nov. widespread in natural soil and water ecosystems in the Czech Republic. Syst Appl Microbiol 2014; 37:467–473 [View Article]
    [Google Scholar]
  22. López-Fernández H, Santos HM, Capelo JL, Fdez-Riverola F, Glez-Peña D et al. Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery. BMC Bioinformatics 2015; 16:1–12 [View Article]
    [Google Scholar]
  23. Fernández-Álvarez C, Torres-Corral Y, Santos Y. Use of ribosomal proteins as biomarkers for identification of Flavobacterium psychrophilum by MALDI-TOF mass spectrometry. J Proteomics 2018; 170:59–69 [View Article][PubMed]
    [Google Scholar]
  24. Ohad I, Danon D. The use of shadow-casting technique for measurement of the width of elongated particles. J Cell Biol 1963; 17:321–326
    [Google Scholar]
  25. Barrow JI, Feltham RKA. Cowan and Steel’s manual for the identification of Medical Bacteria. J Clin Pathol 1993; 46:
    [Google Scholar]
  26. Buck JD. Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 1982; 44:992–993 [View Article][PubMed]
    [Google Scholar]
  27. Kuykendall LD, Roy MA, O’Neill JJ, Devine TE. Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 1988; 38:358–361 [View Article]
    [Google Scholar]
  28. Miller LT. Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 1982; 16:584–586 [View Article]
    [Google Scholar]
  29. Tindall BJ. A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 1990; 13:128–130 [View Article]
    [Google Scholar]
  30. Tindall BJ. Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 1990; 66:199–202 [View Article]
    [Google Scholar]
  31. Brian J, Tindall BJ, Sikorski J, Robert A, Smibert NRK. Phenotypic characterization and the principles of comparative systematics. Methods for General and Molecular Microbiology, 3rd ed. Washington, DC: ASM Press; 2007 pp 330–393
    [Google Scholar]
  32. Kim M, Oh H-S, Park S-C, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article]
    [Google Scholar]
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