1887

Abstract

A Gram-stain-negative, aerobic, polarly flagellated, straight or curved rod-shaped bacterium, designated strain M1K-6, was isolated from deep seawater samples collected from the Mariana Trench. The strain grew at −4 to 37 °C (optimum, 25–30 °C), at pH 5.5–10.0 (optimum, pH 7.0) and with 0.5–14.0  % (w/v) NaCl (optimum, 2.0 %). It did not reduce nitrate to nitrite nor hydrolyse gelatin or starch. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain M1K-6 was affiliated with the genus , sharing 93.1–97.0  % sequence similarity with the type strains of recognized species. The major cellular fatty acids were summed feature 3 (C 6/C 7), summed feature 8 (C 7/C 6), C, C 3-OH and C. The predominant respiratory quinone was ubiquinone-8. Polar lipids of strain M1K-6 included phosphatidylethanolamine, phosphatidylglycerol and two unidentified lipids. The genomic G+C content of strain M1K-6 was 46.0 mol%. Based on data from the present polyphasic study, strain M1K-6 was considered to represent a novel species within the genus , for which the name sp. nov. is proposed. The type strain is M1K-6 (=KCTC 72501=MCCC 1K03890).

Funding
This study was supported by the:
  • the Science and Technology Basic Resources Investigation Program of China (Award 2017FY100804)
    • Principle Award Recipient: xi-ying zhang
  • Taishan Scholars Program of Shandong Province (Award tspd20181203)
    • Principle Award Recipient: Yu-Zhong Zhang
  • National Science Foundation of China (Award 31870052)
    • Principle Award Recipient: Xiu-Lan Chen
  • AoShan Talents Cultivation Program (Award 2017ASTCP-OS14)
    • Principle Award Recipient: Yu-Zhong Zhang
  • National Key R&D Program of China (Award 2018YFC1406704)
    • Principle Award Recipient: xi-ying zhang
  • National Key R&D Program of China (Award 2018YFC1406703)
    • Principle Award Recipient: Yu-Zhong Zhang
  • National Key R&D Program of China (Award 2018YFC1406701)
    • Principle Award Recipient: Hai-Nan Su
  • National Key R&D Program of China (Award 2018YFC1406504)
    • Principle Award Recipient: Xiao-Yan Song
  • National Key R&D Program of China (Award 2018YFC0310704)
    • Principle Award Recipient: Xiu-Lan Chen
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2020-09-18
2024-04-25
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References

  1. Baumann L, Baumann P, Mandel M, Allen RD. Taxonomy of aerobic marine eubacteria. J Bacteriol 1972; 110:402–429 [View Article][PubMed]
    [Google Scholar]
  2. Vadschoot VA, Ley JD. Intra- and intergeneric similarities of the rRNA cistrons of Alteromonas, Marinomonas (gen. nov.) and some other gram-negative bacteria. J Gen Microbiol 1983; 129:3057–3074
    [Google Scholar]
  3. Vadschoot VA, Ley JD. Marinomonas gen. nov. in validation of the publication of new names and new combinations previously effectively published outside the IJSB: list no. 13. Int J Syst Bacteriol 1984; 34:91–92
    [Google Scholar]
  4. Satomi M, Fujii T. The family Oceanospirillaceae. In Rosenberg E. editor The Prokaryotes: Gammaproteobacteria Berlin: Springer; 2014 pp 491–527
    [Google Scholar]
  5. Ojha AK, Verma A, Pal Y, Bhatt D, Mayilraj S et al. Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga. Int J Syst Evol Microbiol 2017; 67:2746–2751 [View Article][PubMed]
    [Google Scholar]
  6. Macián MC, Arahal DR, Garay E, Pujalte MJ. Marinomonas aquamarina sp. nov., isolated from oysters and seawater. Syst Appl Microbiol 2005; 28:145–150 [View Article][PubMed]
    [Google Scholar]
  7. Ivanova EP, Onyshchenko OM, Christen R, Lysenko AM, Zhukova NV et al. Marinomonas pontica sp. nov., isolated from the Black Sea. Int J Syst Evol Microbiol 2005; 55:275–279 [View Article][PubMed]
    [Google Scholar]
  8. Zhang D-C, Li H-R, Xin Y-H, Liu H-C, Chen B et al. Marinomonas arctica sp. nov., a psychrotolerant bacterium isolated from the Arctic. Int J Syst Evol Microbiol 2008; 58:1715–1718 [View Article][PubMed]
    [Google Scholar]
  9. Jung Y-T, Oh T-K, Yoon J-H. Marinomonas hwangdonensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2012; 62:2062–2067 [View Article][PubMed]
    [Google Scholar]
  10. Romanenko LA, Uchino M, Mikhailov VV, Zhukova NV, Uchimura T. Marinomonas primoryensis sp. nov., a novel psychrophile isolated from coastal sea-ice in the Sea of Japan. Int J Syst Evol Microbiol 2003; 53:829–832 [View Article][PubMed]
    [Google Scholar]
  11. Romanenko LA, Tanaka N, Frolova GM. Marinomonas arenicola sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2009; 59:2834–2838 [View Article][PubMed]
    [Google Scholar]
  12. Bai X, Lai Q, Dong C, Li F, Shao Z. Marinomonas profundimaris sp. nov., isolated from deep-sea sediment sample of the Arctic Ocean. Antonie van Leeuwenhoek 2014; 106:449–455 [View Article][PubMed]
    [Google Scholar]
  13. Espinosa E, Marco-Noales E, Gómez D, Lucas-Elío P, Ordax M et al. Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. nov. and Marinomonas pollencensis sp. nov. Int J Syst Evol Microbiol 2010; 60:93–98 [View Article][PubMed]
    [Google Scholar]
  14. Yu W-N, Du Z-Z, Chang Y-Q, Mu D-S, Du Z-J. Marinomonas agarivorans sp. nov., an agar-degrading marine bacterium isolated from red algae. Int J Syst Evol Microbiol 2020; 70:100–104 [View Article][PubMed]
    [Google Scholar]
  15. Chimetto LA, Cleenwerck I, Brocchi M, Willems A, De Vos P et al. Marinomonas brasilensis sp. nov., isolated from the coral Mussismilia hispida, and reclassification of Marinomonas basaltis as a later heterotypic synonym of Marinomonas communis. Int J Syst Evol Microbiol 2011; 61:1170–1175 [View Article][PubMed]
    [Google Scholar]
  16. Lane DJ. 16S/23S rRNA sequencing. In Stackebrandt E, Goodfellow M. (editors) Nucleic Acid Techniques in Bacterial Systematics Chichester: Wiley; 1991 pp 115–175
    [Google Scholar]
  17. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  18. Kumar S, Stecher G, Tamura K. mega7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed]
    [Google Scholar]
  19. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article][PubMed]
    [Google Scholar]
  20. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article][PubMed]
    [Google Scholar]
  21. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
    [Google Scholar]
  22. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article][PubMed]
    [Google Scholar]
  23. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article][PubMed]
    [Google Scholar]
  24. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article][PubMed]
    [Google Scholar]
  25. Luo R, Liu B, Xie Y, Li Z, Huang W et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 2012; 1:18 [View Article][PubMed]
    [Google Scholar]
  26. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP et al. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 2016; 44:6614–6624 [View Article][PubMed]
    [Google Scholar]
  27. Haft DH, DiCuccio M, Badretdin A, Brover V, Chetvernin V et al. RefSeq: an update on prokaryotic genome annotation and curation. Nucleic Acids Res 2018; 46:D851–D860 [View Article][PubMed]
    [Google Scholar]
  28. Lee I, Ouk Kim Y, Park S-C, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article][PubMed]
    [Google Scholar]
  29. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
  30. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article][PubMed]
    [Google Scholar]
  31. Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. J Bacteriol 2005; 187:6258–6264 [View Article][PubMed]
    [Google Scholar]
  32. Komagata K, Suzuki K. Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–207
    [Google Scholar]
  33. Collins MD, Jones D. Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acid. J Appl Bacteriol 1980; 48:459–470 [View Article]
    [Google Scholar]
  34. Yoon J-H, Kang S-J, Oh T-K. Marinomonas dokdonensis sp. nov., isolated from sea water. Int J Syst Evol Microbiol 2005; 55:2303–2307 [View Article][PubMed]
    [Google Scholar]
  35. Klotz F, Brinkhoff T, Freese HM, Wietz M, Teske A et al. Tritonibacter horizontis gen. nov. sp. nov. a member of the Rhodobacteraceae, isolated from the Deepwater horizon oil spill. Int J Syst Evol Microbiol 2018; 68:736–744 [View Article][PubMed]
    [Google Scholar]
  36. Murray RGE, Doetsch RN, Robinow CF. Determinative and cytological light microscopy. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp 21–41
    [Google Scholar]
  37. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp 607–654
    [Google Scholar]
  38. Prabagaran SR, Suresh K, Manorama R, Delille D, Shivaji S. Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. Int J Syst Evol Microbiol 2005; 55:309–313 [View Article][PubMed]
    [Google Scholar]
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