sp. nov., a chitin-degrading strain isolated from rhizosphere soil of Free

Abstract

A Gram-stain-negative, aerobic, chitin-degrading, motile bacterial strain with a single polar flagellum, designated XS-10, was isolated from saline soil sampled from the rhizosphere of , Tumd Right Banner, Inner Mongolia, PR China. Strain XS-10 grew at 10–40 °C (optimum, 35 °C), pH 5.0–9.0 (optimum, pH 8.0) and 0–12.5% NaCl (optimum 2.0 %). The phylogenetic analysis based on both the 16S rRNA gene and the phylogenomic tree revealed that strain XS-10 formed a clade with MCT13 and JSS-26, sharing 98.4 and 97.5 % 16S rRNA gene similarities to JSS-26 and MCT13, respectively. Spermidine and Q-10 were the major polyamine and the major respiratory quinone, respectively. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid, two unidentified lipids and an unidentified aminophospholipid. The major fatty acids were summed feature 8 (C 7 and/or C ω6), C and C ω6. The genome of strain XS-10 consisted of a 4 154 291 bp chromosome with a DNA G+C content of 65.5 mol%. The average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization values of strain XS-10 with MCT13 and JSS-26 were 77.8 and 78.6 %, 75.9 and 76.3 %, and 22.0 and 22.9 %, respectively. Based on the phylogenetic, phenotypic, and genotypic characteristics, strain XS-10 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is XS-10 (=CGMCC 1.17078=JCM 33850).

Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award 31960020)
    • Principle Award Recipient: Ji-Quan Sun
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2020-05-27
2024-03-29
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