1887

Abstract

An aerobic, Gram-stain-negative bacterium, designated CLL7-20, was isolated from a marine sediment sample from offshore of Changyi, Shandong Province, China. Cells of strain CLL7-20 were rod-shaped, motile with one or more polar flagella, and grew optimally at pH 7.0, at 28 °C and with 3 % (w/v) NaCl. The principal fatty acids of strain CLL7-20 were C and summed feature 3 (C 7/C 6). The main polar lipids of strain CLL7-20 were phosphatidylethanolamine (PE), phosphatidylglycerol (PG), diphosphatidylglycerol (DPG) and an unidentified aminolipid (AL). Strain CLL7-20 contained Q-9 as the major respiratory quinone. The G+C content of its genomic DNA was 56.2 mol%. Phylogenetically, strain CLL7-20 branched within the genus , with YCSA40 being its closest phylogenetic relative (96.7 % 16S rRNA gene sequence similarity), followed by R65 (96.6 %). Average nucleotide identity and DNA–DNA hybridization values between strain CLL7-20 and the closest related reference strains were 73.2% and 19.8 %, respectively. On the basis of its phenotypic, phylogenetic and chemotaxonomic characteristics, we suggest that strain CLL7-20 (=MCCC 1A14855=KCTC 72664) is the type strain of a novel species in the genus , for which the name sp. nov. is proposed. Based on the genomic analysis, siderophore genes were found from strain CLL7-20, which indicate its potential as a promising alternative to chemical fertilizers in iron-limitated environments such as saline soils.

Funding
This study was supported by the:
  • National Infrastructure for Microbiological Resources (Award NIMR-2019-9)
    • Principle Award Recipient: Zongze Shao
  • China Ocean Mineral Resources Research and Development Association (CN) (Award DY135-B2-01)
    • Principle Award Recipient: Zongze Shao
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2020-04-22
2024-04-25
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References

  1. Gauthier MJ, Lafay B, Christen R, Fernandez L, Acquaviva M et al. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int J Syst Bacteriol 1992; 42:568–576 [View Article][PubMed][PubMed]
    [Google Scholar]
  2. Shieh WY, Jean WD, Lin Y-T, Tseng M. Marinobacter lutaoensis sp. nov., a thermotolerant marine bacterium isolated from a coastal hot spring in Lutao, Taiwan. Can J Microbiol 2003; 49:244–252 [View Article][PubMed][PubMed]
    [Google Scholar]
  3. Yoon J-H, Shin D-Y, Kim I-G, Kang KH, Park Y-H. Marinobacter litoralis sp. nov., a moderately halophilic bacterium isolated from sea water from the East Sea in Korea. Int J Syst Evol Microbiol 2003; 53:563–568 [View Article][PubMed][PubMed]
    [Google Scholar]
  4. Yoon J-H, Lee M-H, Kang S-J, Oh T-K. Marinobacter salicampi sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 2007; 57:2102–2105 [View Article][PubMed][PubMed]
    [Google Scholar]
  5. Montes MJ, Bozal N, Mercadé E. Marinobacter guineae sp. nov., a novel moderately halophilic bacterium from an Antarctic environment. Int J Syst Evol Microbiol 2008; 58:1346–1349 [View Article][PubMed][PubMed]
    [Google Scholar]
  6. Zhang D-C, Li H-R, Xin Y-H, Chi Z-M, Zhou P-J et al. Marinobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from the Arctic. Int J Syst Evol Microbiol 2008; 58:1463–1466 [View Article][PubMed][PubMed]
    [Google Scholar]
  7. Boujida N, Palau M, Charfi S, Manresa Àngels, Skali Senhaji N et al. Marinobacter maroccanus sp. nov., a moderately halophilic bacterium isolated from a saline soil. Int J Syst Evol Microbiol 2019; 69:227–234 [View Article][PubMed][PubMed]
    [Google Scholar]
  8. Kates M. Techniques of Lipidology 106-107, 2nd ed. Amsterdam: Elsevier; 1986 pp 241–246
    [Google Scholar]
  9. Xu S, Wang D, Wei Y, Cui Q, Li W. Marinobacter bohaiensis sp. nov., a moderate halophile isolated from benthic sediment of the Bohai Sea. Int J Syst Evol Microbiol 2018; 68:3534–3539 [View Article][PubMed][PubMed]
    [Google Scholar]
  10. Guo B, Gu J, Ye Y-G, Tang Y-Q, Kida K et al. Marinobacter segnicrescens sp. nov., a moderate halophile isolated from benthic sediment of the South China Sea. Int J Syst Evol Microbiol 2007; 57:1970–1974 [View Article][PubMed][PubMed]
    [Google Scholar]
  11. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed][PubMed]
    [Google Scholar]
  12. Qu L, Zhu F, Zhang J, Gao C, Sun X. Marinobacter daqiaonensis sp. nov., a moderate halophile isolated from a Yellow Sea salt pond. Int J Syst Evol Microbiol 2011; 61:3003–3008 [View Article][PubMed][PubMed]
    [Google Scholar]
  13. Romanenko LA, Schumann P, Rohde M, Zhukova NV, Mikhailov VV et al. Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. Int J Syst Evol Microbiol 2005; 55:143–148 [View Article][PubMed][PubMed]
    [Google Scholar]
  14. Aguilera M, Jiménez-Pranteda ML, Kharroub K, González-Paredes A, Durban JJ et al. Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain. Int J Syst Evol Microbiol 2009; 59:1691–1695 [View Article][PubMed][PubMed]
    [Google Scholar]
  15. Antunes A, França L, Rainey FA, Huber R, Nobre MF et al. Marinobacter salsuginis sp. nov., isolated from the brine-seawater interface of the Shaban Deep, Red Sea. Int J Syst Evol Microbiol 2007; 57:1035–1040 [View Article][PubMed][PubMed]
    [Google Scholar]
  16. Bagheri M, Amoozegar MA, Didari M, Makhdoumi-Kakhki A, Schumann P et al. Marinobacter persicus sp. nov., a moderately halophilic bacterium from a saline lake in Iran. Antonie van Leeuwenhoek 2013; 104:47–54 [View Article][PubMed][PubMed]
    [Google Scholar]
  17. Cao J, Liu P, Liu R, Su H, Wei Y et al. Marinobacter profundi sp. nov., a slightly halophilic bacterium isolated from a deep-sea sediment sample of the New Britain Trench. Antonie van Leeuwenhoek 2019; 112:425–434 [View Article][PubMed][PubMed]
    [Google Scholar]
  18. Cui Z, Gao W, Xu G, Luan X, Li Q et al. Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment. Int J Syst Evol Microbiol 2016; 66:353–359 [View Article][PubMed][PubMed]
    [Google Scholar]
  19. Gao W, Cui Z, Li Q, Xu G, Jia X et al. Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea. Antonie Van Leeuwenhoek 2013; 103:485–491 [View Article][PubMed][PubMed]
    [Google Scholar]
  20. Gorshkova NM, Ivanova EP, Sergeev AF, Zhukova NV, Alexeeva Y et al. Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan. Int J Syst Evol Microbiol 2003; 53:2073–2078 [View Article][PubMed][PubMed]
    [Google Scholar]
  21. Green DH, Bowman JP, Smith EA, Gutierrez T, Bolch CJS. Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates. Int J Syst Evol Microbiol 2006; 56:523–527 [View Article][PubMed][PubMed]
    [Google Scholar]
  22. Gu J, Cai H, Yu S-L, Qu R, Yin B et al. Marinobacter gudaonensis sp. nov., isolated from an oil-polluted saline soil in a Chinese oilfield. Int J Syst Evol Microbiol 2007; 57:250–254 [View Article][PubMed][PubMed]
    [Google Scholar]
  23. Han J-R, Ling S-K, Yu W-N, Chen G-J, Du Z-J. Marinobacter salexigens sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2017; 67:4595–4600 [View Article][PubMed][PubMed]
    [Google Scholar]
  24. Handley KM, Héry M, Lloyd JR. Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment. Int J Syst Evol Microbiol 2009; 59:886–892 [View Article][PubMed][PubMed]
    [Google Scholar]
  25. Hedi A, Cayol JL, Sadfi N, Fardeau M-L. Marinobacter piscensis sp. nov., a moderately halophilic bacterium isolated from salty food in Tunisia. Curr Microbiol 2015; 70:544–549 [View Article][PubMed][PubMed]
    [Google Scholar]
  26. Huo Y-Y, Wang C-S, Yang J-Y, Wu M, Xu X-W. Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea. Int J Syst Evol Microbiol 2008; 58:2885–2889 [View Article][PubMed][PubMed]
    [Google Scholar]
  27. Huu NB, Denner EB, Ha DT, Wanner G, Stan-Lotter H. Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Int J Syst Bacteriol 1999; 49:367–375 [View Article][PubMed][PubMed]
    [Google Scholar]
  28. Kaeppel EC, Gärdes A, Seebah S, Grossart H-P, Ullrich MS. Marinobacter adhaerens sp. nov., isolated from marine aggregates formed with the diatom Thalassiosira weissflogii . Int J Syst Evol Microbiol 2012; 62:124–128 [View Article][PubMed][PubMed]
    [Google Scholar]
  29. Kharroub K, Aguilera M, Jiménez-Pranteda ML, González-Paredes A, Ramos-Cormenzana A et al. Marinobacter oulmenensis sp. nov., a moderately halophilic bacterium isolated from brine of a salt concentrator. Int J Syst Evol Microbiol 2011; 61:2210–2214 [View Article][PubMed][PubMed]
    [Google Scholar]
  30. Kim B-Y, Weon H-Y, Yoo S-H, Kim J-S, Kwon S-W et al. Marinobacter koreensis sp. nov., isolated from sea sand in Korea. Int J Syst Evol Microbiol 2006; 56:2653–2656 [View Article][PubMed][PubMed]
    [Google Scholar]
  31. Kim J-O, Lee H-J, Han S-I, Whang K-S. Marinobacter halotolerans sp. nov., a halophilic bacterium isolated from a saltern crystallizing pond. Int J Syst Evol Microbiol 2017; 67:460–465 [View Article][PubMed][PubMed]
    [Google Scholar]
  32. Lee OO, Lai PY, Wu H-xian, Zhou X-jian, Miao L et al. Marinobacter xestospongiae sp. nov., isolated from the marine sponge Xestospongia testudinaria collected from the Red Sea. Int J Syst Evol Microbiol 2012; 62:1980–1985 [View Article][PubMed][PubMed]
    [Google Scholar]
  33. León MJ, Sánchez-Porro C, Ventosa A. Marinobacter aquaticus sp. nov., a moderately halophilic bacterium from a solar saltern. Int J Syst Evol Microbiol 2017; 67:2622–2627 [View Article][PubMed][PubMed]
    [Google Scholar]
  34. Liebgott P-P, Casalot L, Paillard S, Lorquin J, Labat M. Marinobacter vinifirmus sp. nov., a moderately halophilic bacterium isolated from a wine-barrel-decalcification wastewater. Int J Syst Evol Microbiol 2006; 56:2511–2516 [View Article][PubMed][PubMed]
    [Google Scholar]
  35. Liu C, Chen C-X, Zhang X-Y, Yu Y, Liu A et al. Marinobacter antarcticus sp. nov., a halotolerant bacterium isolated from Antarctic intertidal sandy sediment. Int J Syst Evol Microbiol 2012; 62:1838–1844 [View Article][PubMed][PubMed]
    [Google Scholar]
  36. Liu Q, Xamxidin M, Sun C, Cheng H, Meng F-X et al. Marinobacter fuscus sp. nov., a marine bacterium of Gammaproteobacteria isolated from surface seawater. Int J Syst Evol Microbiol 2018; 68:3156–3162 [View Article][PubMed][PubMed]
    [Google Scholar]
  37. Luo Y-J, Xie B-S, Lv X-L, Cai M, Wang Y-N et al. Marinobacter shengliensis sp. nov., a moderately halophilic bacterium isolated from oil-contaminated saline soil. Antonie van Leeuwenhoek 2015; 107:1085–1094 [View Article][PubMed][PubMed]
    [Google Scholar]
  38. Martín S, Márquez MC, Sánchez-Porro C, Mellado E, Arahal DR et al. Marinobacter lipolyticus sp. nov., a novel moderate halophile with lipolytic activity. Int J Syst Evol Microbiol 2003; 53:1383–1387 [View Article][PubMed][PubMed]
    [Google Scholar]
  39. Ng HJ, López-Pérez M, Webb HK, Gomez D, Sawabe T et al. Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water. PLoS One 2014; 9:e106514 [View Article][PubMed][PubMed]
    [Google Scholar]
  40. Park S, Kim S, Kang C-H, Jung Y-T, Yoon J-H. Marinobacter confluentis sp. nov., a lipolytic bacterium isolated from a junction between the ocean and a freshwater lake. Int J Syst Evol Microbiol 2015; 65:4873–4879 [View Article][PubMed][PubMed]
    [Google Scholar]
  41. Rani S, Koh H-W, Kim H, Rhee S-K, Park S-J. Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment. Int J Syst Evol Microbiol 2017; 67:205–211 [View Article][PubMed][PubMed]
    [Google Scholar]
  42. Roh SW, Quan Z-X, Nam Y-D, Chang H-W, Kim K-H et al. Marinobacter goseongensis sp. nov., from seawater. Int J Syst Evol Microbiol 2008; 58:2866–2870 [View Article][PubMed][PubMed]
    [Google Scholar]
  43. Shivaji S, Gupta P, Chaturvedi P, Suresh K, Delille D. Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 2005; 55:1453–1456 [View Article][PubMed][PubMed]
    [Google Scholar]
  44. Vaidya B, Kumar R, Korpole S, Tanuku NRS, Pinnaka AK. Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water. Int J Syst Evol Microbiol 2015; 65:2056–2063 [View Article][PubMed][PubMed]
    [Google Scholar]
  45. Wang C-Y, Ng C-C, Tzeng W-S, Shyu Y-T. Marinobacter szutsaonensis sp. nov., isolated from a solar saltern. Int J Syst Evol Microbiol 2009; 59:2605–2609 [View Article][PubMed][PubMed]
    [Google Scholar]
  46. Xu X-W, Wu Y-H, Wang C-S, Yang J-Y, Oren A et al. Marinobacter pelagius sp. nov., a moderately halophilic bacterium. Int J Syst Evol Microbiol 2008; 58:637–640 [View Article][PubMed][PubMed]
    [Google Scholar]
  47. Yoon J-H, Yeo S-H, Kim I-G, Oh T-K. Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 2004; 54:1799–1803 [View Article][PubMed][PubMed]
    [Google Scholar]
  48. Zhong Z-P, Liu Y, Liu H-C, Wang F, Zhou Y-G et al. Marinobacter halophilus sp. nov., a halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol 2015; 65:2838–2845 [View Article][PubMed][PubMed]
    [Google Scholar]
  49. Zhuang D-C, Chen Y-G, Zhang Y-Q, Tang S-K, Wu X-L et al. Marinobacter zhanjiangensis sp. nov., a marine bacterium isolated from sea water of a tidal flat of the South China Sea. Antonie van Leeuwenhoek 2009; 96:295–301 [View Article][PubMed][PubMed]
    [Google Scholar]
  50. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed][PubMed]
    [Google Scholar]
  51. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article][PubMed][PubMed]
    [Google Scholar]
  52. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article][PubMed][PubMed]
    [Google Scholar]
  53. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article][PubMed][PubMed]
    [Google Scholar]
  54. Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 2015; 25:1043–1055 [View Article][PubMed][PubMed]
    [Google Scholar]
  55. Ferreira MJ, Silva H, Cunha A. Promising tool for empowering plants to cope with iron limitation in saline soils: a review. Pedosphere 2019; 29:409–420
    [Google Scholar]
  56. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed][PubMed]
    [Google Scholar]
  57. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article][PubMed][PubMed]
    [Google Scholar]
  58. Wayne LG, Moore WEC, Stackebrandt E, Kandler O, Colwell RR et al. Report of the ad hoc Committee on reconciliation of approaches to bacterial Systematics. Int J Syst Evol Microbiol 1987; 37:463–464 [View Article]
    [Google Scholar]
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