A Gram-stain-negative, facultatively aerobic, rod-shaped, motile by gliding and pink-pigmented bacterial strain, designated ELS1360T, was isolated from a lake sediment sample collected in Inner Mongolia, PR China. Strain ELS1360T grew optimally at 33 °C, at pH 6.5–7.0 and without NaCl. Strain ELS1360T exhibited 97.3, 97.1 and 96.9 % 16S rRNA gene sequence similarities to Hymenobacter aquatilis HMF3095T, Hymenobacter luteus JCM 30328T and Hymenobacter latericoloratus JCM 30327T, respectively, and 90.4–96.9 % to other members of the genus Hymenobacter. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain ELS1360T belonged to the genus Hymenobacter and clustered with H. luteus JCM 30328T and H. latericoloratus JCM 30327T. The predominant cellular fatty acids were iso-C15:0, summed feature 3 and C16:1ω5c. Strain ELS1360T contained MK-7 as the sole menaquinone. The major polar lipids contained phosphatidylethanolamine and two unidentified lipids. The genomic DNA G+C content of strain ELS1360T was 57.1 mol%. Based on the results of our phylogenetic, phenotypic, genotypic and chemotaxonomic analyses, it is concluded that strain ELS1360T represents a novel species within the genus Hymenobacter, for which the name Hymenobacter sediminis sp. nov. is proposed. The type strain is ELS1360T (=KCTC 62449T=MCCC 1H00319T).
MunozR,
Rosselló-MóraR,
AmannR.
Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov. Syst Appl Microbiol2016; 39:281–296 [View Article]
HirschP,
LudwigW,
HethkeC,
SittigM,
HoffmannB et al.Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antartica soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent. Syst Appl Microbiol1998; 21:374–383 [View Article]
BuczolitsS,
DennerEBM,
KämpferP,
BusseH-J.
Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and 'Taxeobacter chitinovorans' as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999. Int J Syst Evol Microbiol2006; 56:2071–2078 [View Article]
HanL,
WuS-J,
QinC-Y,
ZhuY-H,
LuZ-Q et al.Hymenobacter qilianensis sp. nov., isolated from a subsurface sandstone sediment in the permafrost region of Qilian Mountains, China and emended description of the genus Hymenobacter
. Antonie van Leeuwenhoek2014; 105:971–978 [View Article]
ParteAC.
LPSN - List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on. Int J Syst Evol Microbiol2018; 68:1825–1829 [View Article]
LeeJ-J,
LeeY-H,
ParkS-J,
LeeS-Y,
ParkS et al.Hymenobacter seoulensis sp. nov., isolated from river water. Int J Syst Evol Microbiol2017; 67:596–601 [View Article]
LiuQ-Q,
WangY,
LiJ,
DuZ-J,
ChenG-J.
Saccharicrinis carchari sp. nov., isolated from a shark, and emended descriptions of the genus Saccharicrinis and Saccharicrinis fermentans
. Int J Syst Evol Microbiol2014; 64:2204–2209 [View Article]
YoonS-H,
HaS-M,
KwonS,
LimJ,
KimY et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol2017; 67:1613–1617 [View Article]
GorisJ,
KonstantinidisKT,
KlappenbachJA,
CoenyeT,
VandammeP et al. Dna-Dna hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol2007; 57:81–91 [View Article]
AuchAF,
von JanM,
KlenkH-P,
GökerM.
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci2010; 2:117–134 [View Article]
YarzaP,
YilmazP,
PruesseE,
GlöcknerFO,
LudwigW et al. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol2014; 12:635–645 [View Article]
BowmanJP.
Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol2000; 50:1861–1868 [View Article]
DongXZ,
CaiMY.
(editors) Chapter 14. Determination of biochemical characteristics. Manual for the Systematic Identification of General Bacteria Beijing: Science Press; 2001
BernardetJ-F,
NakagawaY,
HolmesB.
Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol2002; 52:1049–1070 [View Article]
ReddyGSN,
Garcia-PichelF.
Description of Hymenobacter arizonensis sp. nov. from the southwestern arid lands of the United States of America. Antonie van Leeuwenhoek2013; 103:321–330 [View Article]
KlassenJL,
FoghtJM.
Differences in carotenoid composition among Hymenobacter and related strains support a tree-like model of carotenoid evolution. Appl Environ Microbiol2008; 74:2016–2022 [View Article]
KroppenstedtRM.
Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr1982; 5:2359–2367 [View Article]