sp. nov., isolated from the intestine of grass carp Free

Abstract

A novel Gram-negative bacterium, designated CFH 10530, was isolated from the intestine of grass carp. The sample was collected from the aquaculture training base at the College of Fisheries, Henan Normal University, Xinxiang, PR China. Cells of strain CFH 10530 were coccoid, ovoid or short-rod-shaped, aerobic, non-spore-forming and non-motile. 16S rRNA gene sequence analysis demonstrated that strain CFH 10530 was closely related to SYSUP0003 (97.7 % sequence similarity), HN-182 (96.5 %) and DCY94 (96.1 %). The strain grew optimally at 25–28 °C, at pH 7.0 and with 0–2 % (w/v) NaCl. Cells were positive for catalase and oxidase, nitrate was reduced and HS was not produced. The isoprenoid quinone was Q-10. Major cellular fatty acids were summed feature 8, C and C3-OH. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, one unidentified aminolipid and five unidentified polar lipids. The genome size was 3 331 229 bp with a G+C content of 69.6 mol%. The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between CFH 10530 and the other species of the genus were found to be below the recommended levels for species delineation (ANIm <85, ANIb <80 and dDDH <24 %). Based on its physiological properties, chemotaxonomic characteristics and low ANI and dDDH results, strain CFH 10530 is considered to represent a novel species for which the name sp. nov., is proposed. The type strain is CFH 10530 (=KCTC 62919=CGMCC 1.16597).

Funding
This study was supported by the:
  • Doctor Scientific Research Fund of Xinxiang Medical University (Award XYBSKYZZ201625)
    • Principle Award Recipient: Hong Ming
  • Henan Province University youth researcher support project (Award 2017GGJS106)
    • Principle Award Recipient: Hong Ming
  • Innovation Scientists and Technicians Troop Construction Projects of Henan Province (Award CXTD2016043)
    • Principle Award Recipient: Guo-Xing Nie
  • Natural Science Foundation of China (Award 3150004)
    • Principle Award Recipient: Hong Ming
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2024-03-29
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