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Abstract

A bacterial strain, designated 2DFW10M-5, was isolated from gut of the larva of collected in the Republic of Korea. Cells of the strain were Gram-stain-positive, non-motile and rod-shaped. The strain grew at the range of 10–37 °C (optimum, 28–30 °C) and pH 4.0–8.0 (optimum, pH 7.0) and tolerated up to 1 % NaCl (w/v; optimum, 0 %) on Reasoner's 2A medium. It was catalase-positive and oxidase-negative. The 16S rRNA gene sequence of strain 2DFW10M-5 showed the highest similarity to RU-04 (98.4 %), KIS12-7 (98.2 %), PU-02 (97.5 %), RU-16 (97.4 %) and TS-56 (97.2 %). The phylogenetic tree based on the 16S rRNA gene sequence revealed that strain 2DFW10M-5 fell into the radius of the genus . The predominant fatty acid was ω-cyclohexyl-C. The polar lipids of strain 2DFW10M-5 were diphosphatidylglycerol, phosphatidylglycerol, an unidentified phospholipid and two unidentified lipids. The detected isoprenoid quinones were MK-11 (61.0 %), MK-10 (33.7 %) and MK-12 (5.3 %). The peptidoglycan contained - and -alanine, -glutamic acid, glycine, -serine and -lysine with -lysine as the diamino acid. The DNA G+C content calculated from the genome sequence of strain 2DFW10M-5 was 69.2 mol%. On the basis of its genomic, phylogenetic and phenotypic properties and distinctiveness, strain 2DFW10M-5 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 2DFW10M-5 (=KACC 19316=NBRC 113049).

Funding
This study was supported by the:
  • National Institute of Agricultural Sciences (Award PJ013549)
    • Principle Award Recipient: Soon-Wo Kwon
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2019-11-01
2024-04-16
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References

  1. Kim H, Park D-S, Oh H-W, Lee KH, Chung D-H et al. Gryllotalpicola gen. nov., with descriptions of Gryllotalpicola koreensis sp. nov., Gryllotalpicola daejeonensis sp. nov. and Gryllotalpicola kribbensis sp. nov. from the gut of the African mole cricket, Gryllotalpa africana, and reclassification of Curtobacterium ginsengisoli as Gryllotalpicola ginsengisoli comb. nov. Int J Syst Evol Microbiol 2012; 62:2363–2370 [View Article]
    [Google Scholar]
  2. Kim MK, Kim Y-J, Kim H-B, Kim S-Y, Yi T-H et al. Curtobacterium ginsengisoli sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 2008; 58:2393–2397 [View Article]
    [Google Scholar]
  3. Moon J-Y, Kim S-J, Hamada M, Ahn J-H, Weon H-Y et al. Gryllotalpicola soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 2014; 64:4079–4083 [View Article]
    [Google Scholar]
  4. Fang H, Lv W, Huang Z, Liu S-J, Yang H. Gryllotalpicola reticulitermitis sp. nov., isolated from a termite gut. Int J Syst Evol Microbiol 2015; 65:85–89 [View Article]
    [Google Scholar]
  5. Chin C-S, Alexander DH, Marks P, Klammer AA, Drake J et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 2013; 10:563569 [View Article]
    [Google Scholar]
  6. Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 2014; 30:2068–2069 [View Article]
    [Google Scholar]
  7. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP et al. Ncbi prokaryotic genome annotation pipeline. Nucleic Acids Res 2016; 44:6614–6624 [View Article]
    [Google Scholar]
  8. Lagesen K, Hallin P, Rødland EA, Staerfeldt H-H, Rognes T et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007; 35:3100–3108 [View Article]
    [Google Scholar]
  9. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article]
    [Google Scholar]
  10. Pruesse E, Peplies J, Glöckner FO. Sina: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 2012; 28:1823–1829 [View Article]
    [Google Scholar]
  11. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article]
    [Google Scholar]
  12. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article]
    [Google Scholar]
  13. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article]
    [Google Scholar]
  14. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
    [Google Scholar]
  15. Kim M, Oh H-S, Park S-C, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article]
    [Google Scholar]
  16. Hamada M, Tamura T, Yamamura H, Suzuki K-ichiro, Hayakawa M et al. Lysinimicrobium mangrovi gen. nov., sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove. Int J Syst Evol Microbiol 2012; 62:1731–1735 [View Article]
    [Google Scholar]
  17. Uchida K, AIDA KO. An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 1984; 30:131–134 [View Article]
    [Google Scholar]
  18. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE, USA: Microbial ID Inc; 1990
    [Google Scholar]
  19. Hamada M, Yamamura H, Komukai C, Tamura T, Suzuki K-ichiro et al. Luteimicrobium album sp. nov., a novel actinobacterium isolated from a lichen collected in Japan, and emended description of the genus Luteimicrobium . J Antibiot 2012; 65:427–431 [View Article]
    [Google Scholar]
  20. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
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