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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 69, Issue 2

A novel ‘Candidatus Phytoplasma asteris’ subgroup 16SrI-(E/AI)AI associated with blueberry stunt disease in eastern Canada Free

Abstract

Phytoplasmas (‘Candidatus Phytoplasma’ species) are phytopathogenic bacteria vectored by insects and are associated with crop diseases that cause severe yield losses by affecting reproductive tissue development. Infection of northern highbush blueberry plants (Vaccinium corymbosum; Ericaceae) with phytoplasma leads to yield losses by altering plant development resulting in stunting and subsequent plant death. Samples collected from symptomatic blueberry plants in two important blueberry-producing areas in Canada, in the provinces of Québec and Nova Scotia, were analysed for the presence of DNA sequences associated with phytoplasma. Analysis of the 16S rRNA gene sequences demonstrated that the plants were infected with a strain of ‘Candidatus Phytoplasma asteris’, which was previously identified as blueberry stunt phytoplasma (BBS; 16SrI-E). Examination of further bacterial sequences revealed that two distinct 16S rRNA-encoding gene sequences were present in each sample in combination with a single chaperonin-60 (cpn60) sequence and a single rpoperon sequence, suggesting that this strain displays 16S rRNA-encoding gene sequence heterogeneity. Two distinct rrnoperons, rrnE and the newly described rrnAI, were identified in samples analysed from all geographic locations. We propose, based on the sequences obtained, delineating the new subgroup 16SrI-(E/AI)AI, following the nomenclature proposed for heterogeneous subgroups. To our knowledge, this is the first report of a heterogeneous phytoplasma strain affecting blueberry plants and associated with blueberry stunt disease.

  • Received:
  • Accepted:
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Keyword(s): 16SrI , blueberry , heterogeneity , phytoplasma , taxonomy and Vaccinium
© 2017 Her Majesty the Queen in Right of Canada as represented by the Minister of Agriculture and Agri-Food
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2018-11-15
2024-04-19
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References

  1. Maejima K, Oshima K, Namba S. Exploring the phytoplasmas, plant pathogenic bacteria. J Gen Plant Pathol 2014; 80:210–221 [View Article]
     [Google Scholar]
  2. Miyazaki A, Shigaki T, Koinuma H, Iwabuchi N, Rauka GB et al. 'Candidatus Phytoplasma noviguineense', a novel taxon associated with Bogia coconut syndrome and banana wilt disease on the island of New Guinea. Int J Syst Evol Microbiol 2018; 68:170–175 [View Article][PubMed]
     [Google Scholar]
  3. Lee I-M. Universal amplification and analysis of pathogen 16S rDNA for classification and identification of mycoplasmalike organisms. Phytopathology 1993; 83:834–842 [View Article]
     [Google Scholar]
  4. Lee I-M, Gundersen-Rindal DE, Davis RE, Bartoszyk IM. Revised classification scheme of phytoplasmas based on RFLP analyses of 16S rRNA and ribosomal protein gene sequences. Int J Syst Bacteriol 1998; 48:1153–1169 [View Article]
     [Google Scholar]
  5. Lee IM, Davis RE, Gundersen-Rindal DE. Phytoplasma: phytopathogenic mollicutes. Annu Rev Microbiol 2000; 54:221–255 [View Article][PubMed]
     [Google Scholar]
  6. Naderali N, Nejat N, Vadamalai G, Davis RE, Wei W et al. 'Candidatus Phytoplasma wodyetiae', a new taxon associated with yellow decline disease of foxtail palm (Wodyetia bifurcata) in Malaysia. Int J Syst Evol Microbiol 2017; 67:3765–3772 [View Article][PubMed]
     [Google Scholar]
  7. Mitrović J, Kakizawa S, Duduk B, Oshima K, Namba S et al. The groEL gene as an additional marker for finer differentiation of ‘Candidatus Phytoplasma asteris'-related strains. Ann Appl Biol 2011; 159:41–48 [View Article]
     [Google Scholar]
  8. Oshima K, Kakizawa S, Nishigawa H, Jung HY, Wei W et al. Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nat Genet 2004; 36:27–29 [View Article][PubMed]
     [Google Scholar]
  9. Davis RE, Jomantiene R, Dally EL. (editors) Interoperon sequence heterogeneity and differential PCR-mediated amplification of sequences from the two rRNA operons in phytoplasma, 12th International Conference. Sydney, Australia: International Organization of Mycoplasmology; 1998
     [Google Scholar]
  10. Liefting LW, Andersen MT, Beever RE, Gardner RC, Forster RL. Sequence heterogeneity in the two 16S rRNA genes of Phormium yellow leaf phytoplasma. Appl Environ Microbiol 1996; 62:3133–3139[PubMed]
     [Google Scholar]
  11. Martini M, Lee IM, Bottner KD, Zhao Y, Botti S et al. Ribosomal protein gene-based phylogeny for finer differentiation and classification of phytoplasmas. Int J Syst Evol Microbiol 2007; 57:2037–2051 [View Article][PubMed]
     [Google Scholar]
  12. Pérez-López E, Olivier CY, Luna-Rodríguez M, Dumonceaux TJ. Phytoplasma classification and phylogeny based on in silico and in vitro RFLP analysis of cpn60 universal target sequences. Int J Syst Evol Microbiol 2016; 66:5600–5613 [View Article][PubMed]
     [Google Scholar]
  13. Pérez-López E, Rodríguez-Martínez D, Olivier CY, Luna-Rodríguez M, Dumonceaux TJ. Molecular diagnostic assays based on cpn60 UT sequences reveal the geographic distribution of subgroup 16SrXIII-(A/I)I phytoplasma in Mexico. Sci Rep 2017; 7:950 [View Article][PubMed]
     [Google Scholar]
  14. Lee IM, Gundersen-Rindal DE, Davis RE, Bottner KD, Marcone C et al. 'Candidatus Phytoplasma asteris', a novel phytoplasma taxon associated with aster yellows and related diseases. Int J Syst Evol Microbiol 2004; 54:1037–1048 [View Article][PubMed]
     [Google Scholar]
  15. Valiunas D, Alminaite A, Jomantiene R, Davis RE, Maas JL. Possible cause of European blueberry disease is related to North American milkweed yellows phytoplasma. J Plant Pathol 2004; 86:135–140
     [Google Scholar]
  16. Starović M, Kojic S, Kuzmanovic ST, Stojanovic SD, Pavlovic S et al. First Report of Blueberry Reddening Disease in Serbia Associated with 16SrXII-A (Stolbur) Phytoplasma. Plant Dis 2013; 97:1653 [View Article]
     [Google Scholar]
  17. Bagadia PG, Polashock J, Bottner-Parker KD, Zhao Y, Davis RE et al. Characterization and molecular differentiation of 16SrI-E and 16SrIX-E phytoplasmas associated with blueberry stunt disease in New Jersey. Mol Cell Probes 2013; 27:90–97 [View Article][PubMed]
     [Google Scholar]
  18. Rosete YA, Schilder A, Lambert L, Scott J. Identification and molecular characterization of the blueberry stunt phytoplasma in Canada. Phytopathogenic Mollicutes 2015; 5:S17–S18 [View Article]
     [Google Scholar]
  19. Maeso Tozzi DC, Davis RE, Lee IM, Ramsdell DC, Taboada O et al. (editors) Populations of the Sharpnosed Leafhopper Vector, Scaphytopius spp. and Blueberry Stunt Infection Periods in Highbush Blueberry Leuven, Belgium: International Society for Horticultural Science (ISHS); 1993
     [Google Scholar]
  20. Brazelton C, Young K. Edition of World Blueberry Statistics and Intelligence Report International Blueberry Organization 2017
     [Google Scholar]
  21. Mukezangango J. Statistical Overview of the Canadian Fruit Industry Agriculture and Agri-Food Canada 2017
     [Google Scholar]
  22. Smart CD, Schneider B, Blomquist CL, Guerra LJ, Harrison NA et al. Phytoplasma-specific PCR primers based on sequences of the 16S-23S rRNA spacer region. Appl Environ Microbiol 1996; 62:2988–2993[PubMed]
     [Google Scholar]
  23. Gundersen DE, Lee IM. Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs. Phytopathol Mediterr 1996; 35:144–151
     [Google Scholar]
  24. Wei W, Davis RE, Lee IM, Zhao Y. Computer-simulated RFLP analysis of 16S rRNA genes: identification of ten new phytoplasma groups. Int J Syst Evol Microbiol 2007; 57:1855–1867 [View Article][PubMed]
     [Google Scholar]
  25. Dumonceaux TJ, Green M, Hammond C, Perez E, Olivier C. Molecular diagnostic tools for detection and differentiation of phytoplasmas based on chaperonin-60 reveal differences in host plant infection patterns. PLoS One 2014; 9:e116039 [View Article][PubMed]
     [Google Scholar]
  26. Lim PO, Sears BB. Evolutionary relationships of a plant-pathogenic mycoplasmalike organism and Acholeplasma laidlawii deduced from two ribosomal protein gene sequences. J Bacteriol 1992; 174:2606–2611 [View Article][PubMed]
     [Google Scholar]
  27. Bonfield JK, Whitwham A. Gap5-editing the billion fragment sequence assembly. Bioinformatics 2010; 26:1699–1703 [View Article][PubMed]
     [Google Scholar]
  28. Zhao Y, Wei W, Lee IM, Shao J, Suo X et al. Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII). Int J Syst Evol Microbiol 2009; 59:2582–2593 [View Article][PubMed]
     [Google Scholar]
  29. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
     [Google Scholar]
  30. Tseng Y-W, Deng W-L, Chang C-J, Shih H-T, Su C-C et al. The phytoplasma associated with purple woodnettle witches'-broom disease in Taiwan represents a new subgroup of the aster yellows phytoplasma group. Ann Appl Biol 2016; 169:298–310 [View Article]
     [Google Scholar]
  31. Jomantiene R, Davis RE, Valiunas D, Alminaite A. New group 16SrIII phytoplasma lineages in Lithuania exhibit rRNA interoperon sequence heterogeneity. Eur J Plant Pathol 2002; 108:507–517 [View Article]
     [Google Scholar]
  32. Davis RE, Jomantiene R, Kalvelyte A, Dally EL. Differential amplification of sequence heterogeneous ribosomal RNA genes and classification of the 'Fragaria multicipita' phytoplasma. Microbiol Res 2003; 158:229–236 [View Article][PubMed]
     [Google Scholar]
  33. Amaral Mello APO, Bedendo IP, Camargo LEA. Sequence heterogeneity in the 16S rDNA of Tomato big bud phytoplasma belonging to group 16SrIII. J Phytopathol 2006; 154:245–249 [View Article]
     [Google Scholar]
  34. Marcone C, Lee IM, Davis RE, Ragozzino A, Seemüller E. Classification of aster yellows-group phytoplasmas based on combined analyses of rRNA and tuf gene sequences. Int J Syst Evol Microbiol 2000; 50 Pt 5:1703–1713 [View Article][PubMed]
     [Google Scholar]
  35. Davis RE, Zhao Y, Dally EL, Lee IM, Jomantiene R et al. 'Candidatus Phytoplasma pruni', a novel taxon associated with X-disease of stone fruits, Prunus spp.: multilocus characterization based on 16S rRNA, secY, and ribosomal protein genes. Int J Syst Evol Microbiol 2013; 63:766–776 [View Article][PubMed]
     [Google Scholar]
  36. Pérez-López E, Dumonceaux TJ. Detection and identification of the heterogeneous novel subgroup 16SrXIII-(A/I)I phytoplasma associated with strawberry green petal disease and Mexican periwinkle virescence. Int J Syst Evol Microbiol 2016; 66:4406–4415 [View Article][PubMed]
     [Google Scholar]
  37. Torres L, Galdeano E, Fernandez F, Meneguzzi N, Conci L. Establishment of the new subgroup 16SrI-S (rr-rp) tuf-H belonging to 'Ca. phytoplasma asteris' in wild and cultivated plants in Argentina. J Plant Pathol 2011; 93:311–320
     [Google Scholar]
  38. Wei W, Lee IM, Davis RE, Suo X, Zhao Y. Automated RFLP pattern comparison and similarity coefficient calculation for rapid delineation of new and distinct phytoplasma 16Sr subgroup lineages. Int J Syst Evol Microbiol 2008; 58:2368–2377 [View Article][PubMed]
     [Google Scholar]
  39. Olivier CY, Séguin-Swartz G, Hegedus D, Barasubiye T. First report of “Candidatus Phytoplasma asteris”-related strains in Brassica rapa in Saskatchewan, Canada. Plant Dis 2006; 90:832 [View Article]
     [Google Scholar]
  40. Olivier C, Saguez J, Stobbs L, Lowery T, Galka B et al. Occurrence of phytoplasmas in leafhoppers and cultivated grapevines in Canada. Agric Ecosyst Environ 2014; 195:91–97 [View Article]
     [Google Scholar]
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A novel ‘Candidatus Phytoplasma asteris’ subgroup 16SrI-(E/AI)AI associated with blueberry stunt disease in eastern Canada
Int J Syst Evol Microbiol 69, 322 (2019); https://doi.org/10.1099/ijsem.0.003100
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