1887

Abstract

A Gram-stain-negative, aerobic, motile bacterial strain, shQ-4, was isolated from a pear tree in Henan Province, China. The strain grew at 10–41 °C, at pH 4.0–8.0 and in the presence of 1–3 % (w/v) NaCl. It shared highest 16S rRNA gene sequence similarity (96.66 %) with Herbaspirillum chlorophenolicum CPW301. The phylogenetic tree based on 16S rRNA gene sequences showed that strain shQ-4 formed a distinct branch next to reference species in the genus Herbaspirillum . The profile of major polar lipids of strain shQ-4 contained phosphatidylethanolamine (PE), diphosphatidylglycerol (DPG), phosphatidylglycerol (PG) and an unidentified aminophospholipid (APL). The major respiratory quinone was Q-8. The major fatty acids of this strain were C16 : 0, summed feature 3 (C16 : 1ω6c/C16 : 1ω7c), C17 : 0 cyclo and C18 : 0. Strain shQ-4 is considered to represent a novel species of the genus Herbaspirillum , with the proposed name Herbaspirillum piri sp. nov. The type strain is shQ-4 (=CFCC 14641=KCTC 52804).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.003050
2018-10-10
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/68/11/3652.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.003050&mimeType=html&fmt=ahah

References

  1. Baldani JI, Baldani VLD, Seldin L, Dobereiner J. Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol 1986; 36:86–93 [View Article]
    [Google Scholar]
  2. Kirchhof G, Eckert B, Stoffels M, Baldani JI, Reis VM et al. Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants. Int J Syst Evol Microbiol 2001; 51:157–168 [View Article][PubMed]
    [Google Scholar]
  3. Valverde A, Velázquez E, Gutiérrez C, Cervantes E, Ventosa A et al. Herbaspirillum lusitanum sp. nov., a novel nitrogen-fixing bacterium associated with root nodules of Phaseolus vulgaris. Int J Syst Evol Microbiol 2003; 53:1979–1983 [View Article][PubMed]
    [Google Scholar]
  4. Ding L, Yokota A. Proposals of Curvibacter gracilis gen. nov. sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis, [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum]. Int J Syst Evol Microbiol 2004; 54:2223–2230
    [Google Scholar]
  5. Im WT, Bae HS, Yokota A, Lee ST. Herbaspirillum chlorophenolicum sp. nov., a 4-chlorophenol-degrading bacterium. Int J Syst Evol Microbiol 2004; 54:851 [View Article][PubMed]
    [Google Scholar]
  6. Rothballer M, Schmid M, Klein I, Gattinger A, Grundmann S et al. Herbaspirillum hiltneri sp. nov., isolated from surface-sterilized wheat roots. Int J Syst Evol Microbiol 2006; 56:1341–1348 [View Article][PubMed]
    [Google Scholar]
  7. Jung SY, Lee MH, Oh TK, Yoon JH. Herbaspirillum rhizosphaerae sp. nov., isolated from rhizosphere soil of Allium victorialis var. platyphyllum. Int J Syst Evol Microbiol 2007; 57:2284–2288 [View Article][PubMed]
    [Google Scholar]
  8. Lin SY, Hameed A, Arun AB, Liu YC, Hsu YH et al. Description of Noviherbaspirillum malthae gen. nov. sp. nov. isolated from an oil-contaminated soil, and proposal to reclassify Herbaspirillum soli, Herbaspirillum aurantiacum, Herbaspirillum canariense and Herbaspirillum psychrotolerans as Noviherbaspirillum. Int J Syst Evol Microbiol 2013; 63:4100–4107
    [Google Scholar]
  9. Li Y, Fang W, Xue H, Liang WX, Wang LF et al. Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker. Int J Syst Evol Microbiol 2015; 65:432–437 [View Article][PubMed]
    [Google Scholar]
  10. Baker GC, Smith JJ, Cowan DA. Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 2003; 55:541–555 [View Article][PubMed]
    [Google Scholar]
  11. Lane DJ. 16S/23S rRNA sequencing. In Stackebrandt E, Goodfellow M. (editors) Nucleic Acid Techniques in Bacterial Systematics Chichester: Wiley; 1991 pp. 115–175
    [Google Scholar]
  12. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  13. Li Y, Song LM, Guo MW, Wang LF, Liang WX. Sphingobacterium populi sp. nov., isolated from bark of Populus × euramericana. Int J Syst Evol Microbiol 2016; 66:3456–3462 [View Article][PubMed]
    [Google Scholar]
  14. Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; 28:2731–2739 [View Article][PubMed]
    [Google Scholar]
  15. Gomori G. preparation of buffers for use in enzyme studies. Methods in Enzymology 1955; 16:138–146
    [Google Scholar]
  16. Stoltzfus JR, So R, Malarvithi PP, Ladha JK, de Bruijn FJ. Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 1997; 194:25–36 [View Article]
    [Google Scholar]
  17. Gerhardt P, Murray R, Costilow R, Nester EW, Wood WA et al. Manual of methods for general bacteriology Washington, DC: American Society for Microbiology; 1981
    [Google Scholar]
  18. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Manual of Methods for General and Microbiology Washington, DC: American Society for Microbiology; 1994 pp. 607–654
    [Google Scholar]
  19. Cowan ST, Steel KJ. Medical Technology. (Book Reviews: Manual for the Identification of Medical Bacteria). Science 1965; 149:852
    [Google Scholar]
  20. Jenkins D, Richard MG, Daigger GT. Manual on the causes and control of activated sludge bulking and foaming. Water Research Commission 1986
    [Google Scholar]
  21. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  22. Collins MD, Pirouz T, Goodfellow M, Minnikin DE. Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 1977; 100:221–230 [View Article][PubMed]
    [Google Scholar]
  23. Du HJ, Zhang YQ, Liu HY, Su J, Wei YZ et al. Allonocardiopsis opalescens gen. nov., sp. nov., a new member of the suborder Streptosporangineae, from the surface-sterilized fruit of a medicinal plant. Int J Syst Evol Microbiol 2013; 63:900–904 [View Article][PubMed]
    [Google Scholar]
  24. Groth I, Schumann P, Rainey FA, Martin K, Schuetze B et al. Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 1997; 47:1129–1133 [View Article][PubMed]
    [Google Scholar]
  25. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 2001
    [Google Scholar]
  26. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989; 39:159–167 [View Article]
    [Google Scholar]
  27. Marmur J, Doty P. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 1962; 5:109–118 [View Article][PubMed]
    [Google Scholar]
  28. Feng GD, Yang SZ, Xiong X, Li HP, Zhu HH. Sphingomonas spermidinifaciens sp. nov., a novel bacterium containing spermidine as the major polyamine, isolated from an abandoned lead-zinc mine and emended descriptions of the genus Sphingomonas and the species Sphingomonas yantingensis and Sphingomonas japonica. Int J Syst Evol Microbiol 2017; 67:2160–2165 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.003050
Loading
/content/journal/ijsem/10.1099/ijsem.0.003050
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error