1887

Abstract

A Gram-stain-positive, motile, endospore-producing, facultative anaerobic bacterial strain, designated ATCC 27380, was isolated from heat-stressed soil of Cape Canaveral, Florida, USA. Growth was observed at 20–42 °C (optimum, 37 °C), at pH 6.0–10.0 (optimum pH 7.0) and in the presence of 0.5–3 % NaCl (optimum 0.5 %). The cell wall contained meso-diaminopimelic acid as the diagnostic amino acid and the isoprenoid quinone was MK-7. The polar lipids present were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol and one unknown phospholipid. The main fatty acids were iso-C15 : 0 and anteiso-C15 : 0. Phylogenetic analysis based on 16S rRNA gene sequencing affiliated strain ATCC 27380 to the genus Paenibacillus , and showed the highest sequence similarity to Paenibacillus rigui JCM 16352 (97.0 %). The other closely related type strains exhibited 16S rRNA gene sequence similarity values below 95.9 %. The draft genome of ATCC 27380 had a size of 4,361,187 bases, with a G+C content of 51.0 %. The average nucleotide identity and in silico DNA–DNA hybridization values between strain ATCC 27380 and P. rigui JCM 16352 were 72.5% and 18.5 %, respectively, which were below the threshold suggested for species differentiation (96% and 70 %, respectively). The average amino acid identity between strain ATCC 27380 and P. rigui JCM 16352 was 68.72 %, which was above the suggested genus level demarcation of 65 %. Based on phenotypic, genotypic and chemotaxonomic data, strain ATCC 27380 represents a novel species in the genus Paenibacillus , for which the name Paenibacillus xerothermodurans sp. nov. (=DSM 520=NRRL NRS-1629=ATCC 27380) is proposed.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002967
2018-08-21
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/68/10/3190.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002967&mimeType=html&fmt=ahah

References

  1. Bond WW, Favero MS, Korber MR. Bacillus sp. ATCC 27380: a spore with extreme resistance to dry heat. Appl Microbiol 1973; 26:614–616[PubMed]
    [Google Scholar]
  2. Bond WW, Favero MS. Thermal profile of a Bacillus species (ATCC 27380) extremely resistant to dry heat. Appl Microbiol 1975; 29:859–860[PubMed]
    [Google Scholar]
  3. Skerman VBD, McGowan V, Sneath PHA. Approved Lists of Bacterial Names Washington, DC: ASM Press; 1980
    [Google Scholar]
  4. Logan NA, Berge O, Bishop AH, Busse HJ, De Vos P et al. Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 2009; 59:2114–2121 [View Article][PubMed]
    [Google Scholar]
  5. Murray RGE, Doetsch R, Robinow CF. Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994
    [Google Scholar]
  6. Manafi M, Kneifel W. Rapid methods for differentiating gram-positive from gram-negative aerobic and facultative anaerobic bacteria. J Appl Bacteriol 1990; 69:822–827 [View Article][PubMed]
    [Google Scholar]
  7. Chambert R, Cutting SM, Harwood CR. Molecular biological methods for Bacillus. In Modern Microbiological Methods Chichester, New York: Wiley; 1990
    [Google Scholar]
  8. Xu P, Li WJ, Tang SK, Zhang YQ, Chen GZ et al. Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 2005; 55:1149–1153 [View Article][PubMed]
    [Google Scholar]
  9. Dhanjal S, Ruckmani A, Cameotra SS, Pukall R, Klenk HP et al. Yaniella fodinae sp. nov., isolated from a coal mine. Int J Syst Evol Microbiol 2011; 61:535–539 [View Article][PubMed]
    [Google Scholar]
  10. Cowan ST, Steel KJ. Manual for the identification of Medical Bacteria Cambridge, New York: Cambridge University Press; 1965
    [Google Scholar]
  11. Lanyi B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1987; 19:1–67
    [Google Scholar]
  12. Smith NR, Gordon RE, Clark FE. Aerobic Spore Forming Bacteria Washington, DC: United States Department of Agriculture; 1952
    [Google Scholar]
  13. Smibert RM, Gordon RE, Clark FE. Phenotypic characterization. In Methods for General and Molecular Bacteriology 1994 pp. 607–654
    [Google Scholar]
  14. Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 1974; 28:226–231[PubMed]
    [Google Scholar]
  15. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  16. Bligh EG, Dyer WJ. A rapid method of total lipid extraction and purification. Can J Biochem Physiol 1959; 37:911–917 [View Article][PubMed]
    [Google Scholar]
  17. Komagata K, Suzuki K. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiology 1987; 19:161–207
    [Google Scholar]
  18. Sasser M. Identification of Bacteria By Gas Chromatography Of Cellular Fatty Acids Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  19. Pandey KK, Mayilraj S, Chakrabarti T. Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 2002; 52:1559–1567 [View Article][PubMed]
    [Google Scholar]
  20. Lane DJ. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics 1991 pp. 115–175
    [Google Scholar]
  21. Mayilraj S, Saha P, Suresh K, Saini HS. Ornithinimicrobium kibberense sp. nov., isolated from the Indian Himalayas. Int J Syst Evol Microbiol 2006; 56:1657–1661 [View Article][PubMed]
    [Google Scholar]
  22. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article][PubMed]
    [Google Scholar]
  23. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  24. Schumann P, Maier T. MALDI-TOF mass spectrometry applied to classification and identification of bacteria. Methods Microbiol 2014; 41:275–306
    [Google Scholar]
  25. Aziz RK, Bartels D, Best AA, Dejongh M, Disz T et al. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 2008; 9:75 [View Article][PubMed]
    [Google Scholar]
  26. Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article][PubMed]
    [Google Scholar]
  27. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
  28. Bond WW, Favero MS. Bacillus xerothermodurans sp. nov., a species forming endospores extremely resistant to dry heat. Int J Syst Bacteriol 1977; 27:157–160 [View Article]
    [Google Scholar]
  29. Kämpfer P, Rosselló-Mora R, Falsen E, Busse HJ, Tindall BJ. Cohnella thermotolerans gen. nov., sp. nov., and classification of 'Paenibacillus hongkongensis' as Cohnella hongkongensis sp. nov. Int J Syst Evol Microbiol 2006; 56:781–786 [View Article][PubMed]
    [Google Scholar]
  30. Baik KS, Lim CH, Choe HN, Kim EM, Seong CN. Paenibacillus rigui sp. nov., isolated from a freshwater wetland. Int J Syst Evol Microbiol 2011; 61:529–534 [View Article][PubMed]
    [Google Scholar]
  31. Susin MF, Perez HR, Baldini RL, Gomes SL. Functional and structural analysis of HrcA repressor protein from Caulobacter crescentus. J Bacteriol 2004; 186:6759–6767 [View Article][PubMed]
    [Google Scholar]
  32. Stackebrandt E, Goebel BM. Taxonomic Note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Evol Microbiol 1994; 44:846–849 [View Article]
    [Google Scholar]
  33. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article][PubMed]
    [Google Scholar]
  34. Rodriguez LM, Konstantinidis KT. The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprints 2016; 4:1900
    [Google Scholar]
  35. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:152–155
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002967
Loading
/content/journal/ijsem/10.1099/ijsem.0.002967
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error