1887

Abstract

A Gram-negative, aerobic, non-motile, rod-shaped bacterium, designated MS1-4, was isolated from mangrove sediment of the Jiulong River Estuary, Fujian Province, China. The isolate formed yellow colonies on ZB 2216E agar. Optimal growth was observed at pH 6.0, at 34 °C and in the presence of 4 % (w/v) NaCl. Strain MS1-4 shared highest 16S rRNA gene sequence similarity of 97.7 % with Altererythrobacter mangrovi C9-11, followed by Altererythrobacter ishigakiensis JPCCMB0017 (97.2 %). Phylogenetic analysis indicated that strain MS1-4 formed a clade with A. mangrovi C9-11 within the genus Altererythrobacter . The main cellular fatty acid was summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and the sole respiratory quinone was ubiquinone Q-10. The main polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and glycolipids. The G+C content of the DNA was 60.4 mol%. Based on data from this polyphasic characterization, strain MS1-4 should be classified as representing a novel species in the genus Altererythrobacter , for which the name Altererythrobacter flavus sp. nov. is proposed. The type strain is MS1-4 (=MCCC 1K02683=NBRC 112977).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002822
2018-05-24
2019-10-16
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/68/7/2265.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002822&mimeType=html&fmt=ahah

References

  1. Kwon KK, Woo JH, Yang SH, Kang JH, Kang SG et al. Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov. Int J Syst Evol Microbiol 2007;57:2207–2211 [CrossRef][PubMed]
    [Google Scholar]
  2. Lee KB, Liu CT, Anzai Y, Kim H, Aono T et al. The hierarchical system of the 'Alphaproteobacteria': description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov. Int J Syst Evol Microbiol 2005;55:1907–1919 [CrossRef][PubMed]
    [Google Scholar]
  3. Xue X, Zhang K, Cai F, Dai J, Wang Y et al. Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter. Int J Syst Evol Microbiol 2012;62:28–32 [CrossRef][PubMed]
    [Google Scholar]
  4. Xue H, Piao CG, Guo MW, Wang LF, Fang W et al. Description of Altererythrobacter aerius sp. nov., isolated from air, and emended description of the genus Altererythrobacter. Int J Syst Evol Microbiol 2016;66:4543–4548 [CrossRef][PubMed]
    [Google Scholar]
  5. Matsumoto M, Iwama D, Arakaki A, Tanaka A, Tanaka T et al. Altererythrobacter ishigakiensis sp. nov., an astaxanthin-producing bacterium isolated from a marine sediment. Int J Syst Evol Microbiol 2011;61:2956–2961 [CrossRef][PubMed]
    [Google Scholar]
  6. Wu YH, Xu L, Meng FX, Zhang DS, Wang CS et al. Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 2014;64:116–121 [CrossRef][PubMed]
    [Google Scholar]
  7. Lai Q, Yuan J, Shao Z. Altererythrobacter marinus sp. nov., isolated from deep seawater. Int J Syst Evol Microbiol 2009;59:2973–2976 [CrossRef][PubMed]
    [Google Scholar]
  8. Seo SH, Lee SD. Altererythrobacter marensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2010;60:307–311 [CrossRef][PubMed]
    [Google Scholar]
  9. Nedashkovskaya OI, Cho SH, Joung Y, Joh K, Kim MN et al. Altererythrobacter troitsensis sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 2013;63:93–97 [CrossRef][PubMed]
    [Google Scholar]
  10. Fan ZY, Xiao YP, Hui W, Tian GR, Lee JS et al. Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 2011;61:2035–2039 [CrossRef][PubMed]
    [Google Scholar]
  11. Yoon JH, Kang KH, Yeo SH, Oh TK. Erythrobacter luteolus sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 2005;55:1167–1170 [CrossRef][PubMed]
    [Google Scholar]
  12. Kang JW, Kim MS, Lee JH, Baik KS, Seong CN. Altererythrobacter rigui sp. nov., isolated from wetland freshwater. Int J Syst Evol Microbiol 2016;66:2491–2496 [CrossRef][PubMed]
    [Google Scholar]
  13. Park S, Jung YT, Park JM, Yoon JH. Altererythrobacter confluentis sp. nov., isolated from water of an estuary environment. Int J Syst Evol Microbiol 2016;66:4002–4008 [CrossRef][PubMed]
    [Google Scholar]
  14. Kim JH, Yoon JH, Kim W. Altererythrobacter sediminis sp. nov., isolated from lagoon sediments. Int J Syst Evol Microbiol 2016;66:5424–5429 [CrossRef][PubMed]
    [Google Scholar]
  15. Qin D, Ma C, Hu A, Zhang F, Hu H et al. Altererythrobacter estronivorus sp. nov., an estrogen-degrading strain isolated from Yundang Lagoon of Xiamen city in China. Curr Microbiol 2016;72:634–640 [CrossRef][PubMed]
    [Google Scholar]
  16. Kumar NR, Nair S, Langer S, Busse HJ, Kämpfer P. Altererythrobacter indicus sp. nov., isolated from wild rice (Porteresia coarctata Tateoka). Int J Syst Evol Microbiol 2008;58:839–844 [CrossRef][PubMed]
    [Google Scholar]
  17. Zhao Q, Li HR, Han QQ, He AL, Nie CY et al. Altererythrobacter soli sp. nov., isolated from desert sand. Int J Syst Evol Microbiol 2017;67:454–459 [CrossRef][PubMed]
    [Google Scholar]
  18. Yuan CG, Chen X, Jiang Z, Chen W, Liu L et al. Altererythrobacter lauratis sp. nov. and Altererythrobacter palmitatis sp. nov., isolated from a Tibetan hot spring. Antonie van Leeuwenhoek 2017;110:1077–1086 [CrossRef][PubMed]
    [Google Scholar]
  19. Zhang W, Yuan X, Feng Q, Zhang R, Zhao X et al. Altererythrobacter buctense sp. nov., isolated from mudstone core. Antonie van Leeuwenhoek 2016;109:793–799 [CrossRef][PubMed]
    [Google Scholar]
  20. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017;67:1613–1617 [CrossRef][PubMed]
    [Google Scholar]
  21. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007;23:2947–2948 [CrossRef][PubMed]
    [Google Scholar]
  22. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870–1874 [CrossRef][PubMed]
    [Google Scholar]
  23. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406–425 [CrossRef][PubMed]
    [Google Scholar]
  24. Rzhetsky A, Nei M. A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 1992;9:945–967
    [Google Scholar]
  25. Rzhetsky A, Nei M. Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol Biol Evol 1993;10:1073–1095 [CrossRef][PubMed]
    [Google Scholar]
  26. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981;17:368–376 [CrossRef][PubMed]
    [Google Scholar]
  27. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980;16:111–120 [CrossRef][PubMed]
    [Google Scholar]
  28. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009;106:19126–19131 [CrossRef][PubMed]
    [Google Scholar]
  29. Yang Y, Zhang G, Sun Z, Cheung MK, Huang C. Altererythrobacter oceanensis sp. nov., isolated from the Western Pacific. Antonie van Leeuwenhoek 2014;106:1191–1198 [CrossRef][PubMed]
    [Google Scholar]
  30. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  31. Collins M. Isoprenoid quinone analysis in bacterial classification and identification. In Goodfellow M, Minnikin DE. (editors) Chemical Methods in Bacterial Systematics London: Academic Press; 1985; pp.267–287
    [Google Scholar]
  32. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984;2:233–241 [CrossRef]
    [Google Scholar]
  33. Liao H, Li Y, Zhang M, Lin X, Lai Q et al. Altererythrobacter mangrovi sp. nov., isolated from mangrove sediment. Int J Syst Evol Microbiol 2017;67:4851–4856 [CrossRef][PubMed]
    [Google Scholar]
  34. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018;68:461–466 [CrossRef][PubMed]
    [Google Scholar]
  35. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014;64:346–351 [CrossRef][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002822
Loading
/content/journal/ijsem/10.1099/ijsem.0.002822
Loading

Data & Media loading...

Supplements

Supplementary File 2

PDF

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error