1887

Abstract

A novel Gram-stain-negative, moderately halophilic, motile, facultatively anaerobic and rod-shaped strain, designated WDN1C137, was isolated from a marine saltern at Wendeng, PR China. Optimal growth occurred at 40 °C, pH 7.5 and with 7.0 % (w/v) NaCl. Q-10 was the sole respiratory quinone. The major cellular fatty acids (>10.0 %) in WDN1C137 were Cω7 (46.2 %), cyclo Cω8 (18.7 %) and C (12.3 %). The major polar lipids were phosphatidylglycerol, phosphoglycolipid, phosphatidylcholine, one unidentified glycolipid, one unidentified lipid, one unidentified aminolipid and two unidentified phospholipids. The genomic DNA G+C content was 70.9 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that WDN1C137 shared the highest similarity (94.5 %) to KCTC 42110, followed by JCM 10272 (94.2 %) and DSM 23042 (94.1 %). WDN1C137 formed a separate branch from the closely related genera , , and within the family , which indicated that it represented a novel genus in the phylogenetic tree. On the basis of the data from the current polyphasic study, the isolate is proposed to represent a novel species of a novel genus within the family , with the name gen. nov., sp. nov. The type strain of the type species is WDN1C137 (=KCTC 52478=MCCC 1H00170).

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2017-12-01
2024-04-18
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References

  1. Garrity GM, Bell JA, Lilburn T. Family I. Rhodobacteraceae fam. nov. In Garrity GM. (editor) Bergey's Manual of Systematic Bacteriology USA: Springer; 2005 pp. 161–228
    [Google Scholar]
  2. Lai Q, Li G, Liu X, du Y, Sun F et al. Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov. Antonie van Leeuwenhoek 2015; 107:1065–1074 [View Article][PubMed]
    [Google Scholar]
  3. Li AH, Zhou YG. Frigidibacter albus gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from lake water. Int J Syst Evol Microbiol 2015; 65:1199–1206 [View Article][PubMed]
    [Google Scholar]
  4. Li S, Tang K, Liu K, Jiao N. Thiobacimonas profunda gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from deep-sea water. Int J Syst Evol Microbiol 2015; 65:359–364 [View Article][PubMed]
    [Google Scholar]
  5. Lv XL, Xie BS, Cai M, Tang YQ, Wang YN et al. Halodurantibacterium flavum gen. nov., sp. nov., a non-phototrophic bacterium isolated from an oil production mixture. Curr Microbiol 2015; 70:141–148 [View Article][PubMed]
    [Google Scholar]
  6. Park S, Park JM, Kang CH, Kim SG, Yoon JH. Pseudoseohaeicola caenipelagi gen. nov., sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 2015; 65:1819–1824 [View Article][PubMed]
    [Google Scholar]
  7. Park S, Park JM, Kang CH, Yoon JH. Aliiroseovarius pelagivivens gen. nov., sp. nov., isolated from seawater, and reclassification of three species of the genus Roseovarius as Aliiroseovarius crassostreae comb. nov., Aliiroseovarius halocynthiae comb. nov. and Aliiroseovarius sediminilitoris comb. nov. Int J Syst Evol Microbiol 2015; 65:2646–2652 [View Article][PubMed]
    [Google Scholar]
  8. Park S, Won SM, Park JM, Jung YT, Yoon JH. Pontivivens insulae gen. nov., sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2015; 65:2896–2902 [View Article][PubMed]
    [Google Scholar]
  9. Rajasabapathy R, Mohandass C, Yoon JH, Dastager SG, Liu Q et al. Nioella nitratireducens gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from Azorean Island. Antonie van Leeuwenhoek 2015; 107:589–595 [View Article][PubMed]
    [Google Scholar]
  10. Sun F, du Y, Liu X, Lai Q, Shao Z. Halovulum dunhuangense gen. nov., sp. nov., isolated from a saline terrestrial spring. Int J Syst Evol Microbiol 2015; 65:2810–2816 [View Article][PubMed]
    [Google Scholar]
  11. Wu YH, Xu L, Zhou P, Wang CS, Oren A et al. Brevirhabdus pacifica gen. nov., sp. nov., isolated from deep-sea sediment in a hydrothermal vent field. Int J Syst Evol Microbiol 2015; 65:3645–3651 [View Article][PubMed]
    [Google Scholar]
  12. Zhang G, Yang Y, Wang S, Sun Z, Jiao K. Alkalimicrobium pacificum gen. nov., sp. nov., a marine bacterium in the family Rhodobacteraceae . Int J Syst Evol Microbiol 2015; 65:2453–2458 [View Article][PubMed]
    [Google Scholar]
  13. Guo L-Y, Li D-Q, Sang J, Chen G-J, du Z-J. Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae. Int J Syst Evol Microbiol 2016; 66:1593–1599 [View Article]
    [Google Scholar]
  14. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article][PubMed]
    [Google Scholar]
  15. Westram R, Bader K, Pruesse E, Kumar Y, Meier H et al. ARB: a software environment for sequence data. In Bruijn FJD. (editor) Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches Hoboken, NJ: John Wiley & Sons; 2011 pp. 399–406 [Crossref]
    [Google Scholar]
  16. Yarza P, Richter M, Peplies J, Euzeby J, Amann R et al. The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 2008; 31:241–250 [View Article][PubMed]
    [Google Scholar]
  17. Pruesse E, Peplies J, Glöckner FO. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 2012; 28:1823–1829 [View Article][PubMed]
    [Google Scholar]
  18. Jukes TH, Cantor CR. Evolution of the protein molecules. In Munro HN. (editor) Mammalian Protein Metabolism New York: Academic Press; 1969 pp. 21–132 [Crossref]
    [Google Scholar]
  19. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014; 30:1312–1313 [View Article][PubMed]
    [Google Scholar]
  20. Felsenstein J. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author Seattle, USA: Department of Genome Sciences, University of Washington; 2005
    [Google Scholar]
  21. Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989; 39:159–167 [View Article]
    [Google Scholar]
  22. Bernardet JF, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049–1070 [View Article][PubMed]
    [Google Scholar]
  23. Smibert RM, Krieg NR. Phenotypic characterization. In Gerhardt P, Murray RGE, Wood WA, Krieg NR. (editors) Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; 1994 pp. 607–654
    [Google Scholar]
  24. Cowan ST, Steel KJ. Bacterial characters and characterization. In Cowan ST. (editor) Cowan and Steel's Manual for the identification of medical bacteria, 2nd ed. Cambridge, UK: Cambridge University Press; 1974
    [Google Scholar]
  25. Dong XZ, Cai MY. Determination of biochemical characteristics. In Dong XZ, Cai MY. (editors) Manual for the Systematic Identification of General Bacteria Beijing: Science Press; 2001 pp. 370–398
    [Google Scholar]
  26. Leifson E. Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 1963; 85:1183–1184[PubMed]
    [Google Scholar]
  27. Mata JA, Martínez-Cánovas J, Quesada E, Béjar V. A detailed phenotypic characterisation of the type strains of Halomonas species. Syst Appl Microbiol 2002; 25:360–375 [View Article][PubMed]
    [Google Scholar]
  28. Hiraishi A, Ueda Y, Ishihara J, Mori T. Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 1996; 42:457–469 [View Article]
    [Google Scholar]
  29. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  30. Xin H, Itoh T, Zhou P, Suzuki K, Kamekura M et al. Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 2000; 50:1297–1303 [View Article][PubMed]
    [Google Scholar]
  31. Jung YT, Lee JS, Yoon JH. Roseivivax jejudonensis sp. nov., isolated from the junction between the ocean and a freshwater spring at Jeju Island, South Korea. Antonie van Leeuwenhoek 2014; 106:959–967 [View Article][PubMed]
    [Google Scholar]
  32. Suzuki T, Muroga Y, Takahama M, Nishimura Y. Roseivivax halodurans gen. nov., sp. nov. and Roseivivax halotolerans sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from a saline lake. Int J Syst Bacteriol 1999; 49:629–634 [View Article][PubMed]
    [Google Scholar]
  33. Rainey FA, Kelly DP, Stackebrandt E, Burghardt J, Hiraishi A et al. A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. Int J Syst Bacteriol 1999; 49:645–651 [View Article][PubMed]
    [Google Scholar]
  34. Trappen SV, Mergaert J, Swings J. Loktanella salsilacus gen. nov., sp. nov., Loktanella fryxellensis sp. nov. and Loktanella vestfoldensis sp. nov., new members of the Rhodobacter group, isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 2004; 54:1263–1269 [View Article][PubMed]
    [Google Scholar]
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