1887

Abstract

A bacterial strain, TH019, was isolated from cyanobacterial aggregates in a eutrophic lake, Taihu Lake, China. Cells were observed to be slightly curved rod-shaped and stained Gram-negative. Optimal growth was obtained at pH 7.0 (range, 5.0–9.0) and 28 °C (range, 20-37 °C) in R2A broth. The cells were found to be positive for oxidase and catalase activities, nitrate reduction and denitrification. The major respiratory quinone was ubiquinone Q-10. The major fatty acids were identified as C ω6/C  ω7 and C 2OH. The 16S rRNA gene sequence of strain TH019 was phylogenetically related to Dia-1 (97.9 % similarity). The genomic G+C content of strain TH019 was 62.4 mol% based on total genome calculations. Average nucleotide identity and digital DNA–DNA hybridization values for complete genomes were 78.8 and 19.8 %, respectively, between strain TH019 and Dia-1. The phenotypic, chemotaxonomic and phylogenetic properties, and genome analysis suggested that strain TH019 represented a novel species within the genus , for which the name sp. nov. is proposed. The type strain is TH019 (=CGMCC 1.15802=LMG 29721).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002308
2017-10-01
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/10/4272.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002308&mimeType=html&fmt=ahah

References

  1. Rahalkar M, Bahulikar RA, Deutzmann JS, Kroth PG, Schink B. Elstera litoralis gen. nov., sp. nov., isolated from stone biofilms of Lake Constance, Germany. Int J Syst Evol Microbiol 2012; 62:1750–1754 [View Article][PubMed]
    [Google Scholar]
  2. Cai H, Jiang H, Krumholz LR, Yang Z. Bacterial community composition of size-fractioned aggregates within the phycosphere of cyanobacterial blooms in a eutrophic freshwater lake. PLoS One 2014; 9:e102879 [View Article][PubMed]
    [Google Scholar]
  3. Cai HY, Yan ZS, Wang AJ, Krumholz LR, Jiang HL. Analysis of the attached microbial community on mucilaginous cyanobacterial aggregates in the eutrophic Lake Taihu reveals the importance of Planctomycetes. Microb Ecol 2013; 66:73–83 [View Article][PubMed]
    [Google Scholar]
  4. Paisley R. MIS Whole Cell Fatty Acid Analysis by Gas Chromatography Training Manual Newark, DE: MIDI; 1996
    [Google Scholar]
  5. Cai H, Wang K, Huang S, Jiao N, Chen F. Distinct patterns of picocyanobacterial communities in winter and summer in the Chesapeake Bay. Appl Environ Microbiol 2010; 76:2955–2960 [View Article][PubMed]
    [Google Scholar]
  6. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  7. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article][PubMed]
    [Google Scholar]
  8. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  9. Rahalkar MC, Pore S, Arora P, Pandit P, Kapse N et al. Draft genome of Elstera litoralis, a freshwater epilithic biofilm associated bacterium from littoral zone of Lake Constance. Mar Genomics 2015; 24:223–224 [View Article][PubMed]
    [Google Scholar]
  10. Chun J, Rainey FA. Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. Int J Syst Evol Microbiol 2014; 64:316–324 [View Article][PubMed]
    [Google Scholar]
  11. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
  12. Auch AF, von Jan M, Klenk HP, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010; 2:117–134 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002308
Loading
/content/journal/ijsem/10.1099/ijsem.0.002308
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error