1887

Abstract

Bacterial strain YP382-1-A was isolated from marine sediment at Gimnyeong Beach, Jeju Island, Republic of Korea. This strain was found to be aerobic and Gram-stain-negative, with red to purple pigmentation. Cells of strain YP382-1-A were motile, had a single polar flagellum and were short rod-shaped. The predominant quinone in strain YP382-1-A was Q-10. The major fatty acid was C18 : 1ω7c and the DNA G+C content was 60.3 mol%. Phylogenetic analysis based on comparisons of 16S rRNA gene sequences showed that strain YP382-1-A belonged to the order Rhizobiales in the class Alphaproteobacteria . This strain exhibited very low 16S rRNA gene sequence similarity (no higher than 94.5 %) to the type strains of recognized bacterial species of the order Rhizobiales . Strain YP382-1-A appeared as a distinct branch within Rhizobiales in the phylogenetic tree generated. On the basis of the data presented, strain YP382-1-A is considered to represent a novel species of a new genus, classified within a new family. The name Mabikibacter ruber gen. nov., sp. nov., of the new family Mabikibacteraceae fam. nov. is proposed. The type strain of Mabikibacter ruber is YP382-1-A (=JCM 31727=KCCM 90265).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002121
2017-08-25
2019-12-08
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/9/3375.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002121&mimeType=html&fmt=ahah

References

  1. Kuykendall LD, Order VI. Rhizobiales ord. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. (editors) Bergeys Manual of Systematic Bacteriology, 2nd ed.vol. 2 New York: Springer; 2005; p.324
    [Google Scholar]
  2. Garrity GM, Bell JA, Lilburn T, Class I. Alphaproteobacteria class. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. (editors) Bergey’s Manual of Systematic Bacteriology, 2nd ed.vol. 2 New York: Springer; 2005; p.1
    [Google Scholar]
  3. Hiraishi A, Urata K, Satoh T. A new genus of marine budding phototrophic bacteria, Rhodobium gen. nov., which includes Rhodobium orientis sp. nov. and Rhodobium marinum comb. nov. Int J Syst Bacteriol 1995;45:226–234 [CrossRef][PubMed]
    [Google Scholar]
  4. Denner EB, Smith GW, Busse HJ, Schumann P, Narzt T et al. Aurantimonas coralicida gen. nov., sp. nov., the causative agent of white plague type II on Caribbean scleractinian corals. Int J Syst Evol Microbiol 2003;53:1115–1122 [CrossRef][PubMed]
    [Google Scholar]
  5. Park S, Lee JS, Lee KC, Yoon JH. Lentilitoribacter donghaensis gen. nov., sp. nov., a slowly-growing alphaproteobacterium isolated from coastal seawater. Antonie van Leeuwenhoek 2013;103:457–464 [CrossRef][PubMed]
    [Google Scholar]
  6. Poroshina MN, Trotsenko YA, Doronina NV. Methylobrevis pamukkalensis gen. nov., sp. nov., a halotolerant restricted facultative methylotroph isolated from saline water. Int J Syst Evol Microbiol 2015;65:1321–1327 [CrossRef][PubMed]
    [Google Scholar]
  7. Whatmore AM, Davison N, Cloeckaert A, Al Dahouk S, Zygmunt MS et al. Brucella papionis sp. nov., isolated from baboons (Papio spp.). Int J Syst Evol Microbiol 2014;64:4120–4128 [CrossRef][PubMed]
    [Google Scholar]
  8. Román-Ponce B, Jing Zhang Y, Soledad Vásquez-Murrieta M, Hua Sui X, Feng Chen W et al. Rhizobium acidisoli sp. nov., isolated from root nodules of Phaseolus vulgaris in acid soils. Int J Syst Evol Microbiol 2016;66:398–406 [CrossRef][PubMed]
    [Google Scholar]
  9. Jung YT, Park S, Lee JS, Oh TK, Yoon JH. Pseudahrensia aquimaris gen. nov., sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2012;62:2056–2061 [CrossRef][PubMed]
    [Google Scholar]
  10. Palacios L, Arahal DR, Reguera B, Marín I. Hoeflea alexandrii sp. nov., isolated from the toxic dinoflagellate Alexandrium minutum AL1V. Int J Syst Evol Microbiol 2006;56:1991–1995 [CrossRef][PubMed]
    [Google Scholar]
  11. Süβmuth R, Eberspächer J, Haag R, Springer W. Biochemisch-Mikrobiologisches Praktikum Stuttgart: Georg Thieme Verlag; 1987
    [Google Scholar]
  12. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical note 101. Newark, DE: MIDI; 1990
    [Google Scholar]
  13. Martin K, Schumann P, Rainey FA, Schuetze B, Groth I. Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. Int J Syst Bacteriol 1997;47:529–534 [CrossRef][PubMed]
    [Google Scholar]
  14. Bligh EG, Dyer WJ. A rapid method of total lipid extraction and purification. Can J Biochem Physiol 1959;37:911–917 [CrossRef][PubMed]
    [Google Scholar]
  15. Collins MD, Jones D. A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thin-layer chromatography and high performance liquid chromatography. J Appl Bacteriol 1981;51:129–134 [CrossRef][PubMed]
    [Google Scholar]
  16. Brosius J, Palmer ML, Kennedy PJ, Noller HF. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 1978;75:4801–4805 [CrossRef][PubMed]
    [Google Scholar]
  17. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990;215:403–410 [CrossRef][PubMed]
    [Google Scholar]
  18. Larkin MA, Blackshields G, Brown NP, Chenna R, Mcgettigan PA et al. CLUSTAL W and CLUSTAL X version 2.0. Bioinformatics 2007;23:2947–2948 [CrossRef][PubMed]
    [Google Scholar]
  19. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013;30:2725–2729 [CrossRef][PubMed]
    [Google Scholar]
  20. Yoon JH, Kang SJ, Park S, Oh TK. Daeguia caeni gen. nov., sp. nov., isolated from sludge of a textile dye works. Int J Syst Evol Microbiol 2008;58:168–172 [CrossRef][PubMed]
    [Google Scholar]
  21. Woo SG, Ten LN, Park J, Lee M. Ochrobactrum daejeonense sp. nov., a nitrate-reducing bacterium isolated from sludge of a leachate treatment plant. Int J Syst Evol Microbiol 2011;61:2690–2696 [CrossRef][PubMed]
    [Google Scholar]
  22. Kämpfer P, Huber B, Lodders N, Warfolomeow I, Busse HJ et al. Pseudochrobactrum lubricantis sp. nov., isolated from a metal-working fluid. Int J Syst Evol Microbiol 2009;59:2464–2467 [CrossRef][PubMed]
    [Google Scholar]
  23. Kämpfer P, Poppel MT, Wilharm G, Glaeser SP, Busse HJ. Paenochrobactrum pullorum sp. nov. isolated from a chicken. Int J Syst Evol Microbiol 2014;64:1724–1728 [CrossRef][PubMed]
    [Google Scholar]
  24. Peng GX, Tan ZY, Wang ET, Reinhold-Hurek B, Chen WF et al. Identification of isolates from soybean nodules in Xinjiang region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii. Int J Syst Evol Microbiol 2002;52:457–462 [CrossRef][PubMed]
    [Google Scholar]
  25. Mantelin S, Saux MF, Zakhia F, Béna G, Bonneau S et al. Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov. Int J Syst Evol Microbiol 2006;56:827–839 [CrossRef][PubMed]
    [Google Scholar]
  26. Jin L, La HJ, Lee HG, Lee JJ, Lee S et al. Caulobacter profunda sp. nov., isolated from deep freshwater sediment. Int J Syst Evol Microbiol 2014;64:762–767 [CrossRef][PubMed]
    [Google Scholar]
  27. Zhu L, Long M, Si M, Wei L, Li C et al. Asticcacaulis endophyticus sp. nov., a prosthecate bacterium isolated from the root of Geum aleppicum. Int J Syst Evol Microbiol 2014;64:3964–3969 [CrossRef][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002121
Loading
/content/journal/ijsem/10.1099/ijsem.0.002121
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error