1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 67, Issue 8

f.a., sp. nov., a novel yeast isolated from tropical regions Free

Abstract

Two yeast strains, DMKU-WBBC14 and UFMG-CM-Y3283, were isolated from soil in Samutprakarn province in the central part of Thailand and from rotting wood in an Amazonian forest site in the Roraima State in Brazil, respectively. The two strains showed identical sequences of the D1/D2 domain of the large subunit (LSU) rRNA gene and different sequences by three nucleotide substitutions of the internal transcribed spacer (ITS) region. Therefore, these two strains represented a single species which was most closely related to CBS 10845. The nucleotide sequence differences between the two strains of the novel species and the type strain CBS 10845 were 10 substitutions in the D1/D2 region of the LSU rRNA gene and 46 substitutions in the ITS region. DMKU-WBBC14 and UFMG-CM-Y3283 differed in growth temperature profiles. Moreover, they also exhibited different carbon assimilation profiles and growth temperature profiles from the type strain of , CBS 10845. The name f.a., sp. nov. is proposed. The type strain is DMKU-WBBC14 (=CBS 14558=TBRC 6562). The Mycobank number is MB 819722.

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): Cyberlindnera tropicalis , novel yeast species and tropical region
© 2017 IUMS
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001970
2017-08-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/8/2569.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001970&mimeType=html&fmt=ahah

References

  1. Kurtzman CP, Robnett CJ, Basehoar-Powers E. Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res 2008; 8:939–954 [View Article][PubMed]
     [Google Scholar]
  2. Kurtzman CP. Lindnera Kurtzman, Robnett & Basehoar-Powers (2008). In Kurtzman CP, Fell JW, Boekhout T. (editors) The Yeasts, a Taxonomic Study, 5th ed. vol. 1 Amsterdam: Elsevier; 2011 pp. 521–543 [CrossRef]
     [Google Scholar]
  3. Minter DM. Cyberlindnera, a replacement name for Lindnera Kurtzman, et al., nom. illegit. Mycotaxon 2009; 110:473–476 [CrossRef]
     [Google Scholar]
  4. Chen B, Huang X, Zheng JW, Li SP, He J. Candida mengyuniae sp. nov., a metsulfuron-methyl-resistant yeast. Int J Syst Evol Microbiol 2009; 59:1237–1241 [View Article][PubMed]
     [Google Scholar]
  5. Mestre MC, Rosa CA, Fontenla SB. Lindnera rhizosphaerae sp. nov., a yeast species isolated from rhizospheric soil. Int J Syst Evol Microbiol 2011; 61:985–988 [View Article][PubMed]
     [Google Scholar]
  6. Ninomiya S, Mikata K, Kajimura H, Kawasaki H. Two novel ascomycetous yeast species, Wickerhamomyces scolytoplatypi sp. nov. and Cyberlindnera xylebori sp. nov., isolated from ambrosia beetle galleries. Int J Syst Evol Microbiol 2013; 63:2706–2711 [View Article][PubMed]
     [Google Scholar]
  7. Poomtien J, Jindamorakot S, Limtong S, Pinphanichakarn P, Thaniyavarn J. Two new anamorphic yeasts species, Cyberlindnera samutprakarnensis sp. nov. and Candida thasaenensis sp. nov., isolated from industrial wastes in Thailand. Antonie van Leeuwenhoek 2013; 103:229–238 [View Article][PubMed]
     [Google Scholar]
  8. Guamán-Burneo MC, Dussán KJ, Cadete RM, Cheab MA, Portero P et al. Xylitol production by yeasts isolated from rotting wood in the Galápagos Islands, Ecuador, and description of Cyberlindnera galapagoensis f.a., sp. nov. Antonie van Leeuwenhoek 2015; 108:919–931 [View Article][PubMed]
     [Google Scholar]
  9. Cadete RM, Cheab MA, Santos RO, Safar SV, Zilli JE et al. Cyberlindnera xylosilytica sp. nov., a xylitol-producing yeast species isolated from lignocellulosic materials. Int J Syst Evol Microbiol 2015; 65:2968–2974 [View Article][PubMed]
     [Google Scholar]
  10. Limtong S, Yongmanitchai W, Tun MM, Kawasaki H, Seki T. Kazachstania siamensis sp. nov., an ascomycetous yeast species from forest soil in Thailand. Int J Syst Evol Microbiol 2007; 57:419–422 [View Article][PubMed]
     [Google Scholar]
  11. Lopes MR, Ferreira MC, Carvalho TF, Pagnocca FC, Chagas RA et al. Yamadazyma riverae sp. nov., a yeast species isolated from plant materials. Int J Syst Evol Microbiol 2015; 65:4469–4473 [View Article][PubMed]
     [Google Scholar]
  12. Kurtzman CP, Robnett CJ. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 1998; 73:331–371 [View Article][PubMed]
     [Google Scholar]
  13. Kurtzman CP, Robnett CJ. Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses. FEMS Yeast Res 2003; 3:417–432 [View Article][PubMed]
     [Google Scholar]
  14. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997; 25:3389–3402 [View Article][PubMed]
     [Google Scholar]
  15. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
     [Google Scholar]
  16. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article][PubMed]
     [Google Scholar]
  17. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
     [Google Scholar]
  18. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article]
     [Google Scholar]
  19. Kurtzman CP, Fell JW, Boekhout T, Robert V. Methods for the isolation, phenotypic characterization and maintenance of yeasts. In Kurtzman CP, Fell JW, Boekhout T. (editors) The Yeasts, A Taxonomic Study, 5th ed. Amsterdam: Elsevier; 2011 pp. 87–110 [CrossRef]
     [Google Scholar]
  20. Yamada Y, Kondô K. Coenzyme Q system in the classification of the yeast genera Rhodotorula and Cryptococcus, and the yeast-like genera Sporobolomyces and Rhodosporidium. J Gen Appl Microbiol 1973; 19:59–77 [View Article]
     [Google Scholar]
  21. Kuraishi H, Katayama-Fujimura Y, Sugiyama J, Yokoyama T. Ubiquinone systems in fungi. I. distribution of ubiquinones in the major families of ascomycetes, basidiomycetes, and deuteromycetes, and their taxonomic implication. Trans Mycol Soc Jpn 1985; 26:385–395
     [Google Scholar]
  22. Lachance MA, Rosa CA, Carvajal EJ, Freitas LF, Bowles JM. Saccharomycopsis fodiens sp. nov., a rare predacious yeast from three distant localities. Int J Syst Evol Microbiol 2012; 62:2793–2798 [View Article][PubMed]
     [Google Scholar]
  23. Freitas LF, Carvajal Barriga EJ, Barahona PP, Lachance MA, Rosa CA. Kodamaea transpacifica f.a., sp. nov., a yeast species isolated from ephemeral flowers and insects in the Galapagos Islands and Malaysia: further evidence for ancient human transpacific contacts. Int J Syst Evol Microbiol 2013; 63:4324–4329 [View Article][PubMed]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001970
Loading
Cyberlindnera tropicalis f.a., sp. nov., a novel yeast isolated from tropical regions
Int J Syst Evol Microbiol 67, 2569 (2017); https://doi.org/10.1099/ijsem.0.001970
/content/journal/ijsem/10.1099/ijsem.0.001970
/content/journal/ijsem/10.1099/ijsem.0.001970
Loading

Data & Media loading...

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error