Mycobacterium persicum sp. nov., a novel species closely related to Mycobacterium kansasii and Mycobacterium gastri

References

1. Buhler VB, Pollak A. Human infection with atypical acid-fast organisms; report of two cases with pathologic findings. Am J Clin Pathol 1953; 23:363–374 [View Article][PubMed]
   [Google Scholar]
2. Kent PT, Kubica GP. Public Health Mycobacteriology. A Guide for the Level III Laboratory Atlanta: U.S. Department of Health and Human Services; 1985
   [Google Scholar]
3. Tortoli E, Pecorari M, Fabio G, Messinò M, Fabio A. Commercial DNA probes for mycobacteria incorrectly identify a number of less frequently encountered species. J Clin Microbiol 2010; 48:307–310 [View Article][PubMed]
   [Google Scholar]
4. CLSI Susceptibility Testing of Mycobacteria, Nocardiae and Other Aerobic Actinomycetes; Approved Standard - Second Edition M24-A2 Wayne, PA: Clinical and Laboratory Standards Institute; 2011
   [Google Scholar]
5. CDC Standardized Method for HPLC Identification of Mycobacteria Atlanta: U.S. Department of Health and Human Services, Public Health Service; 1996
   [Google Scholar]
6. Kirschner P, Böttger EC. Species identification of mycobacteria using rDNA sequencing. In Parish T, Stoker NG. (editors) Methods in Molecular Biology Vol. 101 Mycobacteria Protocols Totowa, NJ: Humana Press Inc; 2000 pp. 349–361
   [Google Scholar]
7. Telenti A, Marchesi F, Balz M, Bally F, Böttger EC et al. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol 1993; 31:175–178[PubMed]
   [Google Scholar]
8. Adékambi T, Colson P, Drancourt M. rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria. J Clin Microbiol 2003; 41:5699–5708 [View Article][PubMed]
   [Google Scholar]
9. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
   [Google Scholar]
10. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
11. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article][PubMed]
    [Google Scholar]
12. Lee I, Ouk Kim Y, Chun J, Park S-C. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article]
    [Google Scholar]
13. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]