sp. nov. and sp. nov. isolated from peat bog soil and emendation description of the genus Free

Abstract

Four bacterial strains isolated from peat bog soil or swampy meadow in Baden-Württemberg (Germany) and found to have sequences close to that of were compared to this species by using multi-locus sequence analysis and phenotypic tests. The four strains constituted two discrete groups (referred to as the Baden and the Silva groups) belonging to the genus . These groups differed in their ability to grow at 37 °C, reduce nitrate into nitrite, and to produce acid from several carbohydrates. Two novel species are, therefore, proposed: sp. nov. for the Baden group (type strain, 323=CIP 111153=DSM 100043) and for the Silva group (type strain, 213=CIP 111154=DSM 103735). The definition of the genus has also been emended in order to take these two novel species into account.

Keyword(s): MLSA , peat bog soil , Rouxiella and WGS
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/content/journal/ijsem/10.1099/ijsem.0.001794
2017-05-01
2024-03-29
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References

  1. Le Flèche-Matéos A, Levast M, Lomprez F, Arnoux Y, Andonian C et al. Rouxiella chamberiensis gen. nov., sp. nov., a member of the family Enterobacteriaceae isolated from parenteral nutrition bags. Int J Syst Evol Microbiol 2015; 65:1812–1818 [View Article][PubMed]
    [Google Scholar]
  2. Kügler JH, Muhle-Goll C, Hansen SH, Völp AR, Kirschhöfer F et al. Glycolipids produced by Rouxiella sp. DSM 100043 and isolation of the biosurfactants via foam-fractionation. AMB Express 2015; 5:1–11 [View Article]
    [Google Scholar]
  3. Kügler JH. Screening, Production and Characterization of Extracellular Microbial Surfactants Dr.-Ing. thesis, Karlsruher Instituts für Technologie 2015
    [Google Scholar]
  4. Konstantinidis KT, Tiedje JM. Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 2005; 102:2567–2572 [View Article][PubMed]
    [Google Scholar]
  5. Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. J Bacteriol 2005; 187:6258–6264 [View Article][PubMed]
    [Google Scholar]
  6. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article][PubMed]
    [Google Scholar]
  7. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA–DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article][PubMed]
    [Google Scholar]
  8. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article][PubMed]
    [Google Scholar]
  9. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425[PubMed]
    [Google Scholar]
  10. Seo TK. Calculating bootstrap probabilities of phylogeny using multilocus sequence data. Mol Biol Evol 2008; 25:960–971 [View Article][PubMed]
    [Google Scholar]
  11. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [CrossRef]
    [Google Scholar]
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