1887

Abstract

A Gram-stain-negative, non-motile, non-spore-forming, ovoid rod-shaped bacterium, designated strain CAU1172, was isolated from lagoon sediments along the east coast of the Republic of Korea. Strain CAU1172 formed a yellow pigment on marine agar. Growth occurred at 20–37 °C (optimum, 30 °C), at pH 6.5–10 (optimum, 7.5) and in the presence of 0–4 % (w/v) NaCl (optimum, 1 %). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain CAU1172 formed a separate lineage within the genus , and was most closely related to KJ7 (96.1 % similarity). Ubiquinone 10 (Q-10) was the predominant respiratory quinone. The dominant fatty acids were C 7c, C 6 and summed feature 3 (comprising C 7c and/or C 6c). The polar lipids were composed of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid, phospatidylcholine and four unidentified lipids. The DNA G+C content of strain CAU1172 was 63.2 mol%. On the basis of phenotypic and chemotaxonomic data, strain CAU1172 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is CAU1172 (=KCTC 42453=NBRC 110917).

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2016-12-01
2020-09-28
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References

  1. Bernardet J. F., Nakagawa Y., Holmes B.. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes 2002; Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol52:1049–1070 [CrossRef][PubMed]
    [Google Scholar]
  2. Bowman J. P.. 2000; Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol50:1861–1868 [CrossRef][PubMed]
    [Google Scholar]
  3. Cappuccino J. G., Sherman N.. 2002; Microbiology: A Laboratory Manual, 6th edn. Menlo Park, CA: Benjamin/Cummings;
    [Google Scholar]
  4. Fan Z. Y., Xiao Y. P., Hui W., Tian G. R., Lee J. S., Lee K. C., Quan Z. X.. 2011; Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol61:2035–2039 [CrossRef][PubMed]
    [Google Scholar]
  5. Felsenstein J.. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol17:368–376 [CrossRef][PubMed]
    [Google Scholar]
  6. Felsenstein J.. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution39:783–791 [CrossRef]
    [Google Scholar]
  7. Felsenstein J.. 1989; phylip – phylogeny inference package (version 3.2). Cladistics5:164–166
    [Google Scholar]
  8. Fitch W. M., Margoliash E.. 1967; Construction of phylogenetic trees. Science155:279–284 [CrossRef][PubMed]
    [Google Scholar]
  9. Gordon R. E., Mihm J. M.. 1962; Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci98:628–636[CrossRef]
    [Google Scholar]
  10. Jeong S. H., Jin H. M., Lee H. J., Jeon C. O.. 2013; Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat. Int J Syst Evol Microbiol63:971–976 [CrossRef][PubMed]
    [Google Scholar]
  11. Jukes T. H., Cantor C. R.. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism pp.21–132 Edited by Munro H. H.. New York: Academic Press;[CrossRef]
    [Google Scholar]
  12. Jung Y. T., Park S., Lee J. S., Yoon J. H.. 2014; Altererythrobacter aestiaquae sp. nov., isolated from seawater. Int J Syst Evol Microbiol64:3943–3949 [CrossRef][PubMed]
    [Google Scholar]
  13. Kang J. W., Kim M. S., Lee J. H., Baik K. S., Seong C. N.. 2016; Altererythrobacter rigui sp. nov., isolated from wetland freshwater. Int J Syst Evol Microbiol66:2491–2496 [CrossRef]
    [Google Scholar]
  14. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. et al. 2012; Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol62:716–721 [CrossRef][PubMed]
    [Google Scholar]
  15. Komagata K., Suzuki K.. 1987; Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol19:161–208[CrossRef]
    [Google Scholar]
  16. Kumar N. R., Nair S., Langer S., Busse H.-J., Kämpfer P.. 2008; Altererythrobacter indicus sp. nov., isolated from wild rice (Porteresia coarctata Tateoka). Int J Syst Evol Microbiol58:839–844 [CrossRef][PubMed]
    [Google Scholar]
  17. Kwon K. K., Woo J.-H., Yang S.-H., Kang J.-H., Kang S. G., Kim S.-J., Sato T., Kato C.. 2007; Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov. Int J Syst Evol Microbiol57:2207–2211 [CrossRef][PubMed]
    [Google Scholar]
  18. Lai Q., Yuan J., Shao Z.. 2009; Altererythrobacter marinus sp. nov., isolated from deep seawater. Int J Syst Evol Microbiol59:2973–2976 [CrossRef][PubMed]
    [Google Scholar]
  19. Lane D. J.. 1991; 16S/23S RNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp.115–175 Edited by Stackebrandt E., Goodfellow M.. London: John Wiley & Sons Ltd;
    [Google Scholar]
  20. Lányí B.. 1987; Classical and rapid identification methods for medically important bacteria. Methods Microbiol19:1–67[CrossRef]
    [Google Scholar]
  21. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. et al. 2007; clustal w and clustal x version 2.0. Bioinformatics23:2947–2948 [CrossRef][PubMed]
    [Google Scholar]
  22. Lee J. H., Park D. S., Lee H. J., Kim J. K., Ra N. Y.. 2010; Herpetofauna and habitat characteristics of 16 lagoons along the eastern coastline of South Korea. J Ecol Field Biol33:229–236 [CrossRef]
    [Google Scholar]
  23. Lei X., Li Y., Chen Z., Zheng W., Lai Q., Zhang H., Guan C., Cai G., Yang X. et al. 2014; Altererythrobacter xiamenensis sp. nov., an algicidal bacterium isolated from red tide seawater. Int J Syst Evol Microbiol64:631–637 [CrossRef][PubMed]
    [Google Scholar]
  24. Marmur J.. 1961; A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol3:208–218 [CrossRef]
    [Google Scholar]
  25. Matsumoto M., Iwama D., Arakaki A., Tanaka A., Tanaka T., Miyashita H., Matsunaga T.. 2011; Altererythrobacter ishigakiensis sp. nov., an astaxanthin-producing bacterium isolated from a marine sediment. Int J Syst Evol Microbiol61:2956–2961 [CrossRef][PubMed]
    [Google Scholar]
  26. Minnikin D. E., Hutchinson I. G., Caldicott A. B., Goodfellow M.. 1980; Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr188:221–233 [CrossRef]
    [Google Scholar]
  27. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H.. 1984; An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods2:233–241 [CrossRef]
    [Google Scholar]
  28. Nam S. W., Kim W., Chun J., Goodfellow M.. 2004; Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol54:1209–1212 [CrossRef][PubMed]
    [Google Scholar]
  29. Nedashkovskaya O. I., Cho S. H., Joung Y., Joh K., Kim M. N., Shin K. S., Oh H. W., Bae K. S., Mikhailov V. V., Kim S. B.. 2013; Altererythrobacter troitsensis sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol63:93–97 [CrossRef][PubMed]
    [Google Scholar]
  30. Park S. C., Baik K. S., Choe H. N., Lim C. H., Kim H. J., Ka J.-O., Seong C. N.. 2011; Altererythrobacter namhicola sp. nov. and Altererythrobacter aestuarii sp. nov., isolated from seawater. Int J Syst Evol Microbiol61:709–715 [CrossRef][PubMed]
    [Google Scholar]
  31. Park S., Jung Y. T., Park J. M., Yoon J. H.. 2016; Altererythrobacter confluentis sp. nov., isolated from water of an estuary environment. Int J Syst Evol Microbiol66:4002–4008[CrossRef]
    [Google Scholar]
  32. Parte A. C.. 2014; LPSN–list of prokaryotic names with standing in nomenclature. Nucleic Acids Res42:D613–D616 [CrossRef][PubMed]
    [Google Scholar]
  33. Rainey F. A., Silva J., Nobre M. F., Silva M. T., da Costa M. S.. 2003; Porphyrobacter cryptus sp. nov., a novel slightly thermophilic, aerobic, bacteriochlorophyll a-containing species. Int J Syst Evol Microbiol53:35–41 [CrossRef][PubMed]
    [Google Scholar]
  34. Saitou N., Nei M.. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol4:406–425[PubMed]
    [Google Scholar]
  35. Seo S. H., Lee S. D.. 2010; Altererythrobacter marensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol60:307–311 [CrossRef][PubMed]
    [Google Scholar]
  36. Smibert R. M., Krieg N. R.. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp.607–654 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R.. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  37. Tamaoka J., Komagata K.. 1984; Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett25:125–128 [CrossRef]
    [Google Scholar]
  38. Wu Y.-H., Xu L., Meng F.-X., Zhang D.-S., Wang C.-S., Oren A., Xu X.-W.. 2014; Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol64:116–121 [CrossRef][PubMed]
    [Google Scholar]
  39. Xue X., Zhang K., Cai F., Dai J., Wang Y., Rahman E., Peng F., Fang C.. 2012; Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter. Int J Syst Evol Microbiol62:28–32 [CrossRef][PubMed]
    [Google Scholar]
  40. Yang Y., Zhang G., Sun Z., Cheung M. K., Huang C.. 2014; Altererythrobacter oceanensis sp. nov., isolated from the Western Pacific. Antonie van Leeuwenhoek106:1191–1198 [CrossRef][PubMed]
    [Google Scholar]
  41. Yoon J. H., Kang K. H., Yeo S. H., Oh T. K.. 2005; Erythrobacter luteolus sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol55:1167–1170 [CrossRef][PubMed]
    [Google Scholar]
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