1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 66, Issue 9

f.a. sp. nov., an ascomycetous anamorphic yeast isolated from a Mid-Atlantic Ridge hydrothermal site (−2300 m) and marine coastal waters Free

Abstract

Two yeast strains that are members of the same species were isolated from different marine habitats, i.e. one from Mid-Atlantic Ridge ocean water samples located in the direct vicinity of black smokers near the Rainbow deep-sea hydrothermal vent and one from Brazilian marine water samples off the Ipanema beach. Strains CLIB 1964 and CLIB 1965 are anamorphic ascomycetous yeasts affiliated to the clade of Saccharomycetales. Interestingly, these strains were phylogenetically and distinctly positioned into a group of species comprising all species of the genus isolated from marine habitats including deep-sea hydrothermal vents, i.e.,,, and . These strains differed significantly in their D1/D2 domain sequences of the LSU rRNA gene from the closely related species mentioned above, by 2.6, 3.0, 3.4, 3.8 and 6.0 %, respectively. Internal transcribed spacer region sequence divergence was also significant and corresponded to 4.6, 4.7, 4.7, 12.0 and 24.7 % with ,, C, and , respectively. Phenotypically, strains CLIB 1964 and CLIB 1965 could be distinguished from closely related species by their inability to assimilate -sorbose. CLIB 1964 (=CBS 14301=UBOCC-A-214001) is the designated type strain for sp. nov. The MycoBank number is MB 815884.

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): coastal water , deep-sea hydrothermal vent , marine , Yamadazyma and Yeast
© 2016 IUMS
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001239
2016-09-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/66/9/3600.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001239&mimeType=html&fmt=ahah

References

  1. Barnett J. A., Payne R. W., Yarrow D. 2000 Yeasts: Characteristics and Identification, 3rd edn. Cambridge: Cambridge University Press;
     [Google Scholar]
  2. Bass D., Howe A., Brown N., Barton H., Demidova M., Michelle H., Li L., Sanders H., Watkinson S. C. et al. 2007; Yeast forms dominate fungal diversity in the deep oceans. Proc Biol Sci 274:3069–3077 [View Article][PubMed]
     [Google Scholar]
  3. Billon-Grand G. 1989; A new ascosporogenous yeast genus: Yamadazyma gen. nov. Mycotaxon 35:201–204
     [Google Scholar]
  4. Burgaud G., Le Calvez T., Arzur D., Vandenkoornhuyse P., Barbier G. 2009; Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents. Environ Microbiol 11:1588–1600 [View Article][PubMed]
     [Google Scholar]
  5. Burgaud G., Arzur D., Durand L., Cambon-Bonavita M. A., Barbier G. 2010; Marine culturable yeasts in deep-sea hydrothermal vents: species richness and association with fauna. FEMS Microbiol Ecol 73:121–133 [View Article][PubMed]
     [Google Scholar]
  6. Burgaud G., Arzur D., Sampaio J. P., Barbier G. 2011; Candida oceani sp. nov., a novel yeast isolated from a Mid-Atlantic Ridge hydrothermal vent (-2300 meters). Antonie Van Leeuwenhoek 100:75–82 [View Article][PubMed]
     [Google Scholar]
  7. Burgaud G., Meslet-Cladière L., Barbier G., Edgcomb V. P. 2014; Astonishing fungal diversity in deep-sea hydrothermal ecosystems: an untapped resource of biotechnological potential?. In Outstanding Marine Molecules: Chemistry, Biology, Analysis pp 85–98 [CrossRef]
     [Google Scholar]
  8. Ciafardini G., Zullo B. A., Antonielli L., Corte L., Roscini L., Cardinali G. 2013; Yamadazyma terventina sp. nov., a yeast species of the Yamadazyma clade from Italian olive oils. Int J Syst Evol Microbiol 63:372–376 [View Article][PubMed]
     [Google Scholar]
  9. Edgcomb V. P., Kysela D. T., Teske A., De Vera Gomez A., Sogin M. L. 2002; Benthic eukaryotic diversity in the guaymas basin hydrothermal vent environment. Proc Natl Acad Sci U S A 99:7658–7662 [View Article][PubMed]
     [Google Scholar]
  10. Gadanho M., Almeida J. M., Sampaio J. P. 2003; Assessment of yeast diversity in a marine environment in the south of Portugal by microsatellite-primed PCR. Antonie Van Leeuwenhoek 84:217–227[PubMed] [CrossRef]
     [Google Scholar]
  11. Gadanho M., Sampaio J. P. 2005; Occurrence and diversity of yeasts in the mid-atlantic ridge hydrothermal fields near the Azores Archipelago. Microb Ecol 50:408–417 [View Article][PubMed]
     [Google Scholar]
  12. Groenewald M., Robert V., Smith M. T. 2011; The value of the D1/D2 and internal transcribed spacers (ITS) domains for the identification of yeast species belonging to the genus Yamadazyma. Persoonia 26:40–46 [View Article][PubMed]
     [Google Scholar]
  13. Hoffman C. S., Winston F. 1987; A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli . Gene 57:267–272 [View Article][PubMed]
     [Google Scholar]
  14. Jindamorakot S., Am-In S., Kaewwichian R., Limtong S. 2015; Yamadazyma insecticola f.a., sp. nov. and Yamadazyma epiphylla f.a., sp. nov., two novel yeast species. Int J Syst Evol Microbiol 65:1290–1296 [View Article][PubMed]
     [Google Scholar]
  15. Jones E. B. G., Suetrong S., Sakayaroj J., Bahkali A. H., Abdel-Wahab M. A., Boekhout T., Pang K.-L. 2015; Classification of marine ascomycota, basidiomycota, blastocladiomycota and chytridiomycota. Fungal Divers 73:1–72 [View Article]
     [Google Scholar]
  16. Junyapate K., Jindamorakot S., Limtong S. 2014; Yamadazyma ubonensis f.a., sp. nov., a novel xylitol-producing yeast species isolated in Thailand. Antonie Van Leeuwenhoek 105:471–480 [View Article][PubMed]
     [Google Scholar]
  17. Kaewwichian R., Yongmanitchai W., Kawasaki H., Wang P. H., Yang S. H., Limtong S. 2013; Yamadazyma siamensis sp. nov., Yamadazyma phyllophila sp. nov. and Yamadazyma paraphyllophila sp. nov., three novel yeast species isolated from phylloplane in Thailand and Taiwan. Antonie Van Leeuwenhoek 103:777–788 [View Article][PubMed]
     [Google Scholar]
  18. Kurtzman C. P., Robnett C. J. 1998; Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73:331–371[PubMed] [CrossRef]
     [Google Scholar]
  19. Kurtzman C. P., Suzuki M. 2010; Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces . Mycoscience 51:2–14 [View Article]
     [Google Scholar]
  20. Kurtzman C. P. 2011; Yamadazyma Billon-Grand (1989). In The Yeasts, a Taxonomic Study, 5th edn. pp. 919–925 Edited by Kurtzman C. P., Fell J. W., Boekhout T. Amsterdam: Elsevier; [CrossRef]
     [Google Scholar]
  21. Kurtzman C. P., Fell J. W., Boekhout T., Robert V. 2011; Methods for isolation, phenotypic characterization and maintenance of yeasts. In The Yeasts: A Taxonomic Study 7 pp 88–108 Edited by Kurtzman C. P., Fell J. W., Boekhout T. Amsterdam: Elsevier;
     [Google Scholar]
  22. Lachance M. A. 2012; In defense of yeast sexual life cycles: the forma asexualis – an informal proposal. Yeast News Letter 61:24–25
     [Google Scholar]
  23. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. et al. 2007; clustal w and clustal x version 2.0. Bioinformatics 23:2947–2948 [View Article][PubMed]
     [Google Scholar]
  24. Le Calvez T., Burgaud G., Mahé S., Barbier G., Vandenkoornhuyse P. 2009; Fungal diversity in deep-sea hydrothermal ecosystems. Appl Environ Microbiol 75:6415–6421 [View Article][PubMed]
     [Google Scholar]
  25. Lopes M. R., Ferreira M. C., Carvalho T. F., Pagnocca F. C., Chagas R. A., Morais P. B., Rosa L. H., Lachance M. A., Rosa C. A. 2015; Yamadazyma riverae sp. nov., a yeast species isolated from plant materials. Int J Syst Evol Microbiol 65:4469–4473 [View Article][PubMed]
     [Google Scholar]
  26. López-García P., Vereshchaka A., Moreira D. 2007; Eukaryotic diversity associated with carbonates and fluid-seawater interface in lost city hydrothermal field. Environ Microbiol 9:546–554 [View Article][PubMed]
     [Google Scholar]
  27. McNeill J., Barrie F. R., Buck W. R., Demoulin V., Greuter W., Hawksworth D. L., Herendeen P. S., Knapp S., Marhold K. et al. 2012; International code of nomenclature for algae, fungi, and plants (Melbourne Code). Regnum Veg, 154. Koeltz Scientific Books, Königstein
  28. Meyer S. A., Payne R. W., Yarrow D. 1998; Candida Berkhout. In The Yeasts, a Taxonomic Study, 4th Edn. pp 454–573 Edited by Kurtzman C. P., Fell J. W. Amsterdam: Elsevier; [CrossRef]
     [Google Scholar]
  29. Nagahama T., Hamamoto M., Horikoshi K. 2006; Rhodotorula pacifica sp. nov., a novel yeast species from sediment collected on the deep-sea floor of the north-west Pacific Ocean. Int J Syst Evol Microbiol 56:295–299 [View Article][PubMed]
     [Google Scholar]
  30. Nagatsuka Y., Ninomiya S., Kiyuna T., Kigawa R., Sano C., Sugiyama J. 2016; Yamadazyma kitorensis f.a., sp. nov. and Zygoascus biomembranicola f.a., sp. nov., two newyeasts from the stone chamber interior of the Kitora Tumulus, and five novelcombinations of candida species in Yamadazyma and Zygoascus . Int J Syst Evol Microbiol 66:1692–1704 [View Article][PubMed]
     [Google Scholar]
  31. O'Donnell K. 1993; Fusarium and its relatives. In The Fungal Holomorph: Mitotc, Meiotic and Pleomorphic Speciation in Fungal Systematics pp 225–233 Edited by Reynolds D. R., Taylor J. W. Wallingford, UK: CAB International;
     [Google Scholar]
  32. Odds F. C., Bernaerts R. 1994; CHROMagar candida, a new differential isolation medium for presumptive identification of clinically important candida species. J Clin Microbiol 32:1923–1929[PubMed]
     [Google Scholar]
  33. Perrière G., Gouy M. 1996; WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78:364–369 [View Article][PubMed]
     [Google Scholar]
  34. Richards T. A., Jones M. D. M., Leonard G., Bass D. 2012; Marine Fungi: their ecology and molecular diversity. Ann Rev Mar Sci 4:495–522 [CrossRef]
     [Google Scholar]
  35. Statzell-Tallman A., Scorzetti G., Fell J. W. 2010; Candida spencermartinsiae sp. nov., Candida taylorii sp. nov. and Pseudozyma abaconensis sp. nov., novel yeasts from mangrove and coral reef ecosystems. Int J Syst Evol Microbiol 60:1978–1984 Erratum in: Int J Syst Evol Microbiol. 2011 Jul;61(Pt 7):1760-1 [View Article][PubMed]
     [Google Scholar]
  36. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
     [Google Scholar]
  37. Van der Walt J. P., Yarrow D. 1984; Methods for the isolation, maintenance, classification and identification of yeasts. In The Yeasts, a Taxonomic Study , 3rd edn. pp. 45–104 Edited by Kreger-van Rij N. J. W. Amsterdam: Elsevier; [CrossRef]
     [Google Scholar]
  38. Wang Y., Ren Y. C., Li Y., Hui F. L. 2015; Molecular phylogeny and taxonomy of Yamadazyma dushanensis f.a., sp. nov., a cellobiose-fermenting yeast species from China. Curr Microbiol 71:268–273 [View Article][PubMed]
     [Google Scholar]
  39. Weiss S., Samson F., Navarro D., Casaregola S. 2013; YeastIP: a database for identification and phylogeny of Saccharomycotina yeasts. FEMS Yeast Res 13:117–125 [View Article][PubMed]
     [Google Scholar]
  40. White T. J., Bruns T. D., Lee S., Taylor J. W. 1990; Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: a Guide to Methods and Applications pp 315–322 Edited by Innis M. A., Gelfand D. H., Sninsky J., White T. J. San Diego: Academic press;
     [Google Scholar]
  41. Yarrow D. 1998; Methods for the isolation, maintenance and identification of yeasts. In The Yeasts, a Taxonomic Study pp 77–100 Edited by Kurtzman C. P., Fell J. W. Amsterdam: Elsevier; [CrossRef]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001239
Loading
Yamadazyma barbieri f.a. sp. nov., an ascomycetous anamorphic yeast isolated from a Mid-Atlantic Ridge hydrothermal site (−2300 m) and marine coastal waters
Int J Syst Evol Microbiol 66, 3600 (2016); https://doi.org/10.1099/ijsem.0.001239
/content/journal/ijsem/10.1099/ijsem.0.001239
/content/journal/ijsem/10.1099/ijsem.0.001239
Loading

Data & Media loading...

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error