1887

Abstract

The actinomycete strains K12-0408 and K12-0792 were isolated on CM-cellulose agar from rhizosphere soil of a pteridophytic plant collected in Tokyo prefecture, Japan. Their taxonomic positions were determined using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains K12-0408 and K12-0792 were positioned within the family . The strains formed extensively branched aerial and substrate mycelia. Long chains of cylindrical spores with smooth surfaces were formed on aerial hyphae. The cell wall contained diaminopimelic acid, and galactose, glucose, mannose and ribose were detected in whole-cell hydrolysates. The predominant menaquinones were MK-10(H) and MK-10(H). The major cellular fatty acids were anteiso-C and anteiso-C 2-OH. The DNA G+C contents of strains K12-0408 and K12-0792 were 69.6 and 69.7 mol%, respectively. Based on data from the present polyphasic taxonomic study, strains K12-0408 and K12-0792 represent a novel genus, for which the name gen. nov. is proposed, with strain K12-0408 (=NBRC 111897=TBRC 5327) as the type strain of the type species, sp. nov.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001145
2016-08-01
2021-07-28
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/66/8/3071.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001145&mimeType=html&fmt=ahah

References

  1. Ara I., Kudo T. 2007a; Luedemannella gen. nov., a new member of the family Micromonosporaceaeand description of Luedemannella helvata sp. nov. and Luedemannella flava sp. nov. J Gen Appl Microbiol 53:39–51 [CrossRef]
    [Google Scholar]
  2. Ara I., Kudo T. 2007b; Krasilnikovia gen. nov., a new member of the family Micromonosporaceaeand description of Krasilnikovia cinnamonea sp. nov. Actinomycetologica 21:1–10 [View Article]
    [Google Scholar]
  3. Ara I., Bakir M. A., Kudo T. 2008a; Transfer of Catellatospora koreensis Lee, et al. 2000 as Catelliglobosispora koreensis gen. nov., comb. nov. and Catellatospora tsunoense Asano, et al. 1989 as Hamadaea tsunoensis gen. nov., comb. nov., and emended description of the genus Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002. Int J Syst Evol Microbiol 58:1950–1960 [CrossRef]
    [Google Scholar]
  4. Ara I., Matsumoto A., Bakir M. A., Kudo T., Ōmura S., Takahashi Y. 2008b; Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 58:1644–1652 [CrossRef]
    [Google Scholar]
  5. Asano K., Kawamoto I. 1986; Catellatospora, a new genus of the Actinomycetales. Int J Syst Evol Microbiol 36:512–517
    [Google Scholar]
  6. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230 [View Article][PubMed]
    [Google Scholar]
  7. Couch J. N. 1950; Actinoplanes, a new genus of the Actinomycetales . J Elisha Mitchell Sci Soc 66:87–92
    [Google Scholar]
  8. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
    [Google Scholar]
  9. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
    [Google Scholar]
  10. Felsenstein J. 1993; PHYLIP (Phylogenetic Inference Package) Version 3.5c. Department of Genetics, University of Washington
  11. Fitch W. M. 1971; Toward defining the course of evolution: minimal change for a specific tree topology. Syst Zool 20:406–416 [CrossRef]
    [Google Scholar]
  12. Gordon R. E., Mihm J. M. 1957; A comparative study of some strains received as nocardiae. J Bacteriol 73:15–27[PubMed]
    [Google Scholar]
  13. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H.-N. 1974; Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54–63 [CrossRef]
    [Google Scholar]
  14. Hasegawa T., Takizawa M., Tanida S. 1983; A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319–322 [CrossRef]
    [Google Scholar]
  15. Inahashi Y., Matsumoto A., Danbara H., Ōmura S., Takahashi Y. 2010; Phytohabitans suffuscus gen. nov., sp. nov., an actinomycete of the family Micromonosporaceae isolated from plant roots. Int J Syst Evol Microbiol 60:2652–2658 [View Article][PubMed]
    [Google Scholar]
  16. Jacobson E., Grauville W. C., Fogs C. E. 1958 Color Harmony Manual, 4th edn. Chicago: Container Corporation of America;
    [Google Scholar]
  17. Jia F., Liu C., Wang X., Zhao J., Liu Q., Zhang J., Gao R., Xiang W. 2013; Wangella harbinensis gen. nov., sp. nov., a new member of the family Micromonosporaceae. Antonie Van Leeuwenhoek 103:399–408 [View Article][PubMed]
    [Google Scholar]
  18. Kane W. D. 1966; A new genus of Actinoplanaceae, Pilimelia, with a description of two species, Pilimelia terevasa and Pilimelia anulata . J Elisha Mitchell Sci Soc 82:220–223
    [Google Scholar]
  19. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. et al. 2012; Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721 [View Article][PubMed]
    [Google Scholar]
  20. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120[PubMed] [CrossRef]
    [Google Scholar]
  21. Koch C., Kroppenstedt R. M., Rainey F. A., Stackebrandt E. 1996; 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae . Int J Syst Bacteriol 46:765–768 [View Article][PubMed]
    [Google Scholar]
  22. Krasil’nikov N. A. 1938 Ray Fungi and Related Organisms-Actinomycetales Moscow: Akademii Nauk SSSR (in Russian);
    [Google Scholar]
  23. Kroppenstedt R. M. 1985; Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics pp 173–199 Edited by Goodfellow M., Minnikin D. E. London: Academic Press;
    [Google Scholar]
  24. Lechevalier M. P., Lechevalier H. 1970; Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20:435–443 [CrossRef]
    [Google Scholar]
  25. Lechevalier M. P., Stern A. E., Lechevalier H. A. 1981; Phospholipids in the taxonomy of actinomycetes. Zentbl Bakteriol Hyg Abt 1:111–116
    [Google Scholar]
  26. Lee D. W., Lee S. D. 2011; Allocatelliglobosispora scoriae gen. nov., sp. nov., isolated from volcanic ash. Int J Syst Evol Microbiol 61:264–270 [View Article][PubMed]
    [Google Scholar]
  27. Lee S. D., Hah Y. C. 2002; Proposal to transfer Catellatospora ferruginea and 'Catellatospora ishikariense' to Asanoa gen. nov. as Asanoa ferruginea comb. nov. and Asanoa ishikariensis sp. nov., with emended description of the genus Catellatospora . Int J Syst Evol Microbiol 52:967–972 [View Article][PubMed]
    [Google Scholar]
  28. Li J., Zhao G. Z., Zhu W. Y., Huang H. Y., Xu L. H., Zhang S., Li W. J. 2011; Phytomonospora endophytica gen. nov., sp. nov., isolated from the roots of Artemisia annua L. Int J Syst Evol Microbiol 61:2967–2973 [View Article][PubMed]
    [Google Scholar]
  29. Maldonado L. A., Fenical W., Jensen P. R., Kauffman C. A., Mincer T. J., Ward A. C., Bull A. T., Goodfellow M. 2005; Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int J Syst Evol Microbiol 55:1759–1766 [View Article][PubMed]
    [Google Scholar]
  30. Matsumoto A., Takahashi Y., Shinose M., Seino A., Iwai Y., Omura S. 2003; Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae. Int J Syst Evol Microbiol 53:1553–1559 [View Article][PubMed]
    [Google Scholar]
  31. Matsumoto A., Kawaguchi Y., Nakashima T., Iwatsuki M., Ōmura S., Takahashi Y. 2014; Rhizocola hellebori gen. nov., sp. nov., an actinomycete of the family Micromonosporaceae containing 3,4-dihydroxydiaminopimelic acid in the cell-wall peptidoglycan. Int J Syst Evol Microbiol 64:2706–2711 [View Article][PubMed]
    [Google Scholar]
  32. Medina P., Baresi L. 2007; Rapid identification of gelatin and casein hydrolysis using TCA. J Microbiol Methods 69:391–393 [View Article][PubMed]
    [Google Scholar]
  33. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. 1977; Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–117 [CrossRef]
    [Google Scholar]
  34. Monciardini P., Cavaletti L., Ranghetti A., Schumann P., Rohde M., Bamonte R., Sosio M., Mezzelani A., Donadio S. 2009; Novel members of the family Micromonosporaceae, Rugosimonospora acidiphila gen. nov., sp. nov. and Rugosimonospora africana sp. nov. Int J Syst Evol Microbiol 59:2752–2758 [View Article][PubMed]
    [Google Scholar]
  35. Ørskov J. 1923 Investigations Into the Morphology of the Ray Fungi Copenhagen, Denmark: Levin and Munksgaard;
    [Google Scholar]
  36. Qin S., Li J., Zhang Y. Q., Zhu W. Y., Zhao G. Z., Xu L. H., Li W. J. 2009; Plantactinospora mayteni gen. nov., sp. nov., a member of the family Micromonosporaceae. Int J Syst Evol Microbiol 59:2527–2533 [View Article][PubMed]
    [Google Scholar]
  37. Rheims H., Schumann P., Rohde M., Stackebrandt E. 1998; Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae. Int J Syst Evol Microbiol 48:1119–1127
    [Google Scholar]
  38. Sahin N., Veyisoglu A., Tatar D., Saygin H., Cetin D., Guven K., Klenk H. P., Goodfellow M. 2015; Phytomonospora cypria sp. nov., isolated from soil. Antonie Van Leeuwenhoek 108:1425–1432 [View Article][PubMed]
    [Google Scholar]
  39. Saito H., Miura K. I. 1963; Preparation of transforming deoxyribonucleic acid by phenoltreatment. Biochim Biophys Acta 72:619–629[PubMed] [CrossRef]
    [Google Scholar]
  40. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  41. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
  42. Stackebrandt E., Rainey F. A., Ward-Rainey N. L. 1997; Proposal for a new Hierarchic classification system, Actinobacteria classis nov. Int J Syst Evol Microbiol 47:479–491
    [Google Scholar]
  43. Staneck J. L., Roberts G. D. 1974; Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231[PubMed]
    [Google Scholar]
  44. Také A., Matsumoto A., Ōmura S., Takahashi Y. 2015; Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively. J Antibiot 68:322–327 [View Article][PubMed]
    [Google Scholar]
  45. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [View Article]
    [Google Scholar]
  46. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  47. Tamura T., Nakagaito Y., Nishii T., Hasegawa T., Stackebrandt E., Yokota A. 1994; A new genus of the order Actinomycetales Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44:193–203 [View Article][PubMed]
    [Google Scholar]
  48. Tamura T., Hayakawa M., Hatano K. 1997; A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. Int J Syst Evol Microbiol 47:97–102
    [Google Scholar]
  49. Tamura T., Hayakawa M., Hatano K. 2001; A new genus of the order Actinomycetales, Virgosporangium gen. nov., with descriptions of Virgosporangium ochraceum sp. nov. and Virgosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51:1809–1816 [View Article][PubMed]
    [Google Scholar]
  50. Tamura T., Hatano K., Suzuki K. 2006; A new genus of the family Micromonosporaceae, Polymorphospora gen. nov., with description of Polymorphospora rubra sp. nov. Int J Syst Evol Microbiol 56:1959–1964 [View Article][PubMed]
    [Google Scholar]
  51. Thawai C., Tanasupawat S., Itoh T., Kudo T. 2006; Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 56:1789–1794 [View Article][PubMed]
    [Google Scholar]
  52. Thiemann J. E., Pagani H., Beretta G. 1967; A new genus of the Actinoplanaceae: Dactylosporanguim, gen. nov. Archiv FüR Mikrobiologie 58:42–52 [View Article][PubMed]
    [Google Scholar]
  53. Tomiyasu I. 1982; Mycolic acid composition and thermally adaptative changes in Nocardia asteroides . J Bacteriol 151:828–837[PubMed]
    [Google Scholar]
  54. Uchida K., Aida K. 1977; Acyl type of bacterial cell wall: its simple identification by a colorimetric method. J Gen Appl Microbiol 23:249–260 [CrossRef]
    [Google Scholar]
  55. Wang X., Jia F., Liu C., Zhao J., Wang L., Shen Y., Wang J., Zhang J., Li C. et al. 2013; Xiangella phaseoli gen. nov., sp. nov., a member of the family Micromonosporaceae. Int J Syst Evol Microbiol 63:2138–2145 [View Article][PubMed]
    [Google Scholar]
  56. Wiese J., Jiang Y., Tang S. K., Thiel V., Schmaljohann R., Xu L. H., Jiang C. L., Imhoff J. F. 2008; A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol 58:1324–1331 [View Article][PubMed]
    [Google Scholar]
  57. Xie Q. Y., Wang C., Wang R., Qu Z., Lin H. P., Goodfellow M., Hong K. 2011; Jishengella endophytica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 61:1153–1159 [View Article][PubMed]
    [Google Scholar]
  58. Yokota A., Tamura T., Hasegawa T., Huang L. H. 1993; Catenuloplanes japonicus gen. nov., sp. nov., nom. rev., a new genus of the order Actinomycetales . Int J Syst Evol Microbiol 43:805–812
    [Google Scholar]
  59. Zhi X. Y., Li W. J., Stackebrandt E. 2009; An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589–608 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001145
Loading
/content/journal/ijsem/10.1099/ijsem.0.001145
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF

Most cited this month Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error