1887

Abstract

A novel bacterial strain, Back-11, was isolated from sediment soil of a crater lake, Baekrokdam, Hallasan, Jeju, Republic of Korea. Cells of strain Back-11 were Gram-stain-positive, motile, endospore-forming, rod-shaped and oxidase- and catalase-positive. It contained anteiso-C as the major fatty acid, menaquinone-7 (MK-7) as the predominant isoprenoid quinone, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and four unidentified aminophospholipids as the main polar lipids, and -diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content was 45.3 mol%. Phylogenetic analysis, based on 16S rRNA gene sequencing, showed that strain Back-11 was most closely related to THMBG22 (95.5 % similarity) and fell into a clade in the genus . On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain Back-11 represents a novel species in the genus , for which the name sp. nov. is proposed. The type strain is Back-11 ( = KCTC 33723 = CECT 8890).

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2016-05-01
2024-04-19
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References

  1. Ash C., Priest F. G., Collins M. D. 1993–1994; Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64:253–260 [View Article][PubMed]
    [Google Scholar]
  2. Bower V. E., Bates R. G. 1955; pH values of the Clark and Lubs buffer solutions at 25 °C. J Res Natl Bur Stand 55:197–200 [View Article]
    [Google Scholar]
  3. Cao Y., Chen F., Li Y., Wei S., Wang G. 2015; Paenibacillus ferrarius sp. nov., isolated from iron mineral soil. Int J Syst Evol Microbiol 65:165–170 [View Article][PubMed]
    [Google Scholar]
  4. Euzéby J. P. 1997; List of bacterial names with standing in nomenclature: a folder available on the internet. Int J Syst Bacteriol 47:590–592 [View Article][PubMed]
    [Google Scholar]
  5. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [View Article][PubMed]
    [Google Scholar]
  6. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
    [Google Scholar]
  7. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [View Article]
    [Google Scholar]
  8. Huang X.-F., Wang F.-Z., Zhang W., Li J., Ling J., Yang J., Dong J.-D., Tian X.-P. 2014; Paenibacillus abyssi sp. nov., isolated from an abyssal sediment sample from the Indian Ocean. Antonie van Leeuwenhoek 106:1089–1095 [View Article][PubMed]
    [Google Scholar]
  9. Jiang B., Zhao X., Liu J., Fu L., Yang C., Hu X. 2015; Paenibacillus shenyangensis sp. nov., a bioflocculant-producing species isolated from soil under a peach tree. Int J Syst Evol Microbiol 65:220–224 [View Article][PubMed]
    [Google Scholar]
  10. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. [View Article] In Mammalian Protein Metabolism vol. 3 pp 21–132Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
  11. Kittiwongwattana C., Thawai C. 2015; Paenibacillus lemnae sp. nov., an endophytic bacterium of duckweed (Lemna aequinoctialis). Int J Syst Evol Microbiol 65:107–112 [View Article][PubMed]
    [Google Scholar]
  12. Lányí B. 1987; Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1–67 [View Article]
    [Google Scholar]
  13. Lee K. C., Kim K. K., Eom M. K., Kim M. J., Lee J.-S. 2011; Fontibacillus panacisegetis sp. nov., a isolated from soil of a ginseng field. Int J Syst Evol Microbiol 61:369–374 [View Article][PubMed]
    [Google Scholar]
  14. Lee J.-J., Yang D.-H., Ko Y.-S., Park J.-K., Im E.-Y., Kim J.-Y., Kwon K.-Y., Lee Y.-J., Kim H.-M., Kim M. K. 2014; Paenibacillus swuensis sp. nov., a bacterium isolated from soil. J Microbiol 52:106–110 [View Article][PubMed]
    [Google Scholar]
  15. Li Q.-Q., Zhou X.-K., Dang L.-Z., Cheng J., Hozzein W. N., Liu M.-J., Hu Q., Li W.-J., Duan Y.-Q. 2014; Paenibacillus nicotianae sp. nov., isolated from a tobacco sample. Antonie van Leeuwenhoek 106:1199–1205 [View Article][PubMed]
    [Google Scholar]
  16. Logan N. A., Berge O., Bishop A. H., Busse H.-J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L., other authors. 2009; Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59:2114–2121 [View Article][PubMed]
    [Google Scholar]
  17. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. 1977; Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–117 [View Article]
    [Google Scholar]
  18. Moon J. C., Jung Y. J., Jung J. H., Jung H. S., Cheong Y. R., Jeon C. O., Lee K. O., Lee S. Y. 2011; Paenibacillus sacheonensis sp. nov., a xylanolytic and cellulolytic bacterium isolated from tidal flat sediment. Int J Syst Evol Microbiol 61:2753–2757 [View Article][PubMed]
    [Google Scholar]
  19. Nakamura L. K. 1987; Bacillus and polymyxa (Prazmowski) Mace 1889 deoxyribonucleic acid relatedness and base composition. Int J Syst Bacteriol 37:391–397 [View Article]
    [Google Scholar]
  20. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  21. Sasser M. 1990 Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;
    [Google Scholar]
  22. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477[PubMed]
    [Google Scholar]
  23. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. 1997; Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus . Int J Syst Bacteriol 47:289–298 [View Article][PubMed]
    [Google Scholar]
  24. Shin Y. K., Lee J.-S., Chun C. O., Kim H.-J., Park Y.-H. 1996; Isoprenoid quinone profiles of Leclercia adecarboxylata KCTC 1036T . J Microbiol Biotechnol 6:68–69
    [Google Scholar]
  25. Skerman V.B.D. 1967 A Guide to the Identfication of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
  26. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [View Article]
    [Google Scholar]
  27. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; mega6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  28. Ueda J., Yamamoto S., Kurosawa N. 2013; Paenibacillus thermoaerophilus sp. nov., a moderately thermophilic bacterium isolated from compost. Int J Syst Evol Microbiol 63:3330–3335 [View Article][PubMed]
    [Google Scholar]
  29. Wu Y. F., Wu Q. L., Liu S. J. 2013; Paenibacillus taihuensis sp. nov., isolated from an eutrophic lake. Int J Syst Evol Microbiol 63:3652–3658 [View Article][PubMed]
    [Google Scholar]
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