1887

International Journal of Systematic and Evolutionary Microbiology

Volume 66, Issue 3

sp. nov., isolated from tree bark Free

Abstract

A Gram-stain-positive, facultatively anaerobic, rod-shaped and endospore-forming bacterium, strain BK114-2 isolated from tree bark in Thailand was characterized taxonomically using a polyphasic approach. Analysis based on comparison of 16S rRNA gene sequences indicated that strain BK114-2 was affiliated to the genus , and was closely related to 2301032 (96.7 % 16S rRNA gene sequence similarity), 3PO2SA (96.6 %) and SAFN-016 (96.4 %). Strain BK114-2 contained -diaminopimelic acid in its cell-wall peptidoglycan. The polar lipids were composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unknown phospholipids, five unknown aminophospholipids and six unknown lipids. The only menaquinone detected was MK-7 and the dominant cellular fatty acids were C (22.9 %), anteiso-C (22.6 %), iso-C (19.4 %) and anteiso-C (14.7 %). The DNA G+C content was 52.0 mol%. Based on these results, strain BK114-2 repreesents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is BK114-2 ( = KCTC 33251 = TISTR 2282).

  • Published Online:
© 2015 IUMS
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.000854
2016-03-01
2021-08-01
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/66/3/1187.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.000854&mimeType=html&fmt=ahah

References

  1. Ash C., Priest F. G., Collins M. D. 1994; Paenibacillus gen. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 51. Int J Syst Bacteriol 44:852–853 [View Article]
     [Google Scholar]
  2. Barrow G. I., Feltham R. K. A.editors 1993 Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press; [View Article]
     [Google Scholar]
  3. Benardini J. N., Vaishampayan P. A., Schwendner P., Swanner E., Fukui Y., Osman S., Satomi M., Venkateswaran K. 2011; Paenibacillus phoenicis sp. nov., isolated from the Phoenix Lander assembly facility and a subsurface molybdenum mine. Int J Syst Evol Microbiol 61:1338–1343 [View Article][PubMed]
     [Google Scholar]
  4. Cao Y., Chen F., Li Y., Wei S., Wang G. 2015; Paenibacillus ferrarius sp. nov., isolated from iron mineral soil. Int J Syst Evol Microbiol 65:165–170 [View Article][PubMed]
     [Google Scholar]
  5. Chou J. H., Chou Y. J., Lin K. Y., Sheu S. Y., Sheu D. S., Arun A. B., Young C. C., Chen W. M. 2007; Paenibacillus fonticola sp. nov., isolated from a warm spring. Int J Syst Evol Microbiol 57:1346–1350 [View Article][PubMed]
     [Google Scholar]
  6. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
     [Google Scholar]
  7. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [View Article]
     [Google Scholar]
  8. Forbes L. 1981; Rapid flagella stain. J Clin Microbiol 13:807–809[PubMed]
     [Google Scholar]
  9. Han T.-Y., Tong X.-M., Wang Y.-W., Wang H.-M., Chen X.-R., Kong D.-L., Guo X., Ruan Z.-Y. 2015; Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba . Antonie van Leeuwenhoek 108:659–666 [View Article][PubMed]
     [Google Scholar]
  10. Jiang B., Zhao X., Liu J., Fu L., Yang C., Hu X. 2015; Paenibacillus shenyangensis sp. nov., a bioflocculant-producing species isolated from soil under a peach tree. Int J Syst Evol Microbiol 65:220–224 [View Article][PubMed]
     [Google Scholar]
  11. Kittiwongwattana C., Thawai C. 2015; Paenibacillus lemnae sp. nov., an endophytic bacterium of duckweed (Lemna aequinoctialis). Int J Syst Evol Microbiol 65:107–112 [View Article][PubMed]
     [Google Scholar]
  12. Komagata K., Suzuki K. 1987; Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207 [View Article]
     [Google Scholar]
  13. Kong B. H., Liu Q. F., Liu M., Liu Y., Liu L., Li C. L., Yu R., Li Y. H. 2013; Paenibacillus typhae sp. nov., isolated from roots of Typha angustifolia L. Int J Syst Evol Microbiol 63:1037–1044 [View Article][PubMed]
     [Google Scholar]
  14. Li Y.-F., Calley J. N., Ebert P. J., Helmes E. B. 2014; Paenibacillus lentus sp. nov., a β-mannanolytic bacterium isolated from mixed soil samples in a selective enrichment using guar gum as the sole carbon source. Int J Syst Evol Microbiol 64:1166–1172 [View Article][PubMed]
     [Google Scholar]
  15. Logan N. A., Berge O., Bishop A. H., Busse H.-J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L., other authors. 2009; Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59:2114–2121 [View Article][PubMed]
     [Google Scholar]
  16. Ludwig W., Schleifer K. H., Whitman W. B. 2009; Family IV. Paenibacillaceae fam. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn. vol. 3 p 269Edited by De Vos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F., Schleifer K. H., Whitman W. B. New York: Springer;
     [Google Scholar]
  17. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. 1977; Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104–117 [View Article]
     [Google Scholar]
  18. Moon J. C., Jung Y. J., Jung J. H., Jung H. S., Cheong Y. R., Jeon C. O., Lee K. O., Lee S. Y. 2011; Paenibacillus sacheonensis sp. nov., a xylanolytic and cellulolytic bacterium isolated from tidal flat sediment. Int J Syst Evol Microbiol 61:2753–2757 [View Article][PubMed]
     [Google Scholar]
  19. Osman S., Satomi M., Venkateswaran K. 2006; Paenibacillus pasadenensis sp. nov. and Paenibacillus barengoltzii sp. nov., isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol 56:1509–1514 [View Article][PubMed]
     [Google Scholar]
  20. Padakandla S. R., Lee G.-W., Chae J.-C. 2015; Paenibacillus gelatinilyticus sp. nov. a psychrotolerant bacterium isolated from a reclaimed soil and amended description of Paenibacillus shenyangensis . Antonie van Leeuwenhoek 108:1197–1203 [View Article][PubMed]
     [Google Scholar]
  21. Roux V., Raoult D. 2004; Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54:1049–1054 [View Article][PubMed]
     [Google Scholar]
  22. Saito H., Miura K. I. 1963; Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72:619–629 [View Article][PubMed]
     [Google Scholar]
  23. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
     [Google Scholar]
  24. Sasser M. 1990 Identification of bacteria by gas chromatography of cellular fatty acids MIDI Technical Note 101 Newark, DE: MIDI Inc;
     [Google Scholar]
  25. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. 1997; Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus . Int J Syst Bacteriol 47:289–298 [View Article][PubMed]
     [Google Scholar]
  26. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp 607–654Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
     [Google Scholar]
  27. Sorokin D. Yu. 2005; Is there a limit for high-pH life?. Int J Syst Evol Microbiol 55:1405–1406 [View Article][PubMed]
     [Google Scholar]
  28. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [View Article]
     [Google Scholar]
  29. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [View Article]
     [Google Scholar]
  30. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega 4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [View Article][PubMed]
     [Google Scholar]
  31. Tanasupawat S., Thawai C., Yukphan P., Moonmangmee D., Itoh T., Adachi O., Yamada Y. 2004; Gluconobacter thailandicus sp. nov., an acetic acid bacterium in the α-Proteobacteria. J Gen Appl Microbiol 50:159–167 [View Article][PubMed]
     [Google Scholar]
  32. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [View Article][PubMed]
     [Google Scholar]
  33. Wang L. Y., Li J., Li Q. X., Chen S. F. 2013; Paenibacillus beijingensis sp. nov., a nitrogen-fixing species isolated from wheat rhizosphere soil. Antonie van Leeuwenhoek 104:675–683 [View Article][PubMed]
     [Google Scholar]
  34. Yao R., Wang R., Wang D., Su J., Zheng S., Wang G. 2014; Paenibacillus selenitireducens sp. nov., a selenite-reducing bacterium isolated from a selenium mineral soil. Int J Syst Evol Microbiol 64:805–811 [View Article][PubMed]
     [Google Scholar]
  35. Zhang J., Wang Z. T., Yu H. M., Ma Y. 2013; Paenibacillus catalpae sp. nov., isolated from the rhizosphere soil of Catalpa speciosa . Int J Syst Evol Microbiol 63:1776–1781 [View Article][PubMed]
     [Google Scholar]
  36. Zhou Y., Gao S., Wei D. Q., Yang L. L., Huang X., He J., Zhang Y. J., Tang S. K., Li W. J. 2012; Paenibacillus thermophilus sp. nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China. Antonie van Leeuwenhoek 102:601–609 [View Article][PubMed]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.000854
Loading
Paenibacillus cathormii sp. nov., isolated from tree bark
Int J Syst Evol Microbiol 66, 1187 (2016); https://doi.org/10.1099/ijsem.0.000854
/content/journal/ijsem/10.1099/ijsem.0.000854
/content/journal/ijsem/10.1099/ijsem.0.000854
Loading

Data & Media loading...

Supplements

Supplementary Data

PDF

Most cited this month Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error