1887

Abstract

A spore-forming, rod-shaped Gram-strain-positive bacterium, strain 656.84, was isolated from human faeces in 1984. It contained anteiso-C as the major cellular fatty acid, -diaminopimelic acid was found in the cell wall peptidoglycan, the polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and aminophospholipids as the major components, and the predominant menaquinone was MK-7. The DNA G+C content was 52.9 mol%. The results of comparative 16S rRNA gene sequence studies placed strain 656.84 within the genus Its closest phylogenetic relatives were and . Levels of DNA–DNA relatedness between strain 656.84 and CIP 108005 and CIP 109354 were 17.3 % and 36.8 %, respectively, indicating that strain 656.84 represents a distinct species. On the basis of phenotypic and genotypic results, strain 656.84 is considered to represent a novel species within the genus for which the name sp. nov. is proposed; the type strain is 656.84 ( = DSM 23593 = CIP 101062).

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2015-12-01
2021-04-13
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References

  1. Ash C., Priest F. G., Collins M. D. ( 1993;). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus . Antonie van Leeuwenhoek 64 253260 [CrossRef] [PubMed] .
    [Google Scholar]
  2. Beneduzi A., Costa P. B., Parma M., Melo I. S., Bodanese-Zanettini M. H., Passaglia L.M.P. ( 2010;). Paenibacillus riograndensis sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Triticum aestivum . Int J Syst Evol Microbiol 60 128133 [CrossRef] [PubMed] .
    [Google Scholar]
  3. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. ( 1977;). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81 461466 [CrossRef] [PubMed] .
    [Google Scholar]
  4. Castresana J. ( 2000;). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17 540552 [CrossRef] [PubMed] .
    [Google Scholar]
  5. Chou J. H., Chou Y. J., Lin K. Y., Sheu S. Y., Sheu D. S., Arun A. B., Young C. C., Chen W. M. ( 2007;). Paenibacillus fonticola sp. nov., isolated from a warm spring. Int J Syst Evol Microbiol 57 13461350 [CrossRef] [PubMed] .
    [Google Scholar]
  6. Clermont D., Diard S., Bouchier C., Vivier C., Bimet F., Motreff L., Welker M., Kallow W., Bizet C. ( 2009;). Microbacterium binotii sp. nov., isolated from human blood. Int J Syst Evol Microbiol 59 10161022 [CrossRef] [PubMed] .
    [Google Scholar]
  7. De Ley J., Cattoir H., Reynaerts A. ( 1970;). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12 133142 [CrossRef] [PubMed] .
    [Google Scholar]
  8. Edgar R. C. ( 2004;). muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 17921797 [CrossRef] [PubMed] .
    [Google Scholar]
  9. Felsenstein J. ( 1989;). phylip-Phylogeny Inference Package (version 3.2). Cladistics 5 164166.
    [Google Scholar]
  10. Guindon S., Gascuel O. ( 2003;). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52 696704 [CrossRef] [PubMed] .
    [Google Scholar]
  11. Hong Y. Y., Ma Y. C., Zhou Y. G., Gao F., Liu H. C., Chen S. F. ( 2009;). Paenibacillus sonchi sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sonchus oleraceus . Int J Syst Evol Microbiol 59 26562661 [CrossRef] [PubMed] .
    [Google Scholar]
  12. Huss V.A.R., Festl H., Schleifer K. H. ( 1983;). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4 184192 [CrossRef] [PubMed] .
    [Google Scholar]
  13. Irving A. T., Mimuro H., Kufer T. A., Lo C., Wheeler R., Turner L. J., Thomas B. J., Malosse C., Gantier M. P., other authors. ( 2014;). The immune receptor NOD1 and kinase RIP2 interact with bacterial peptidoglycan on early endosomes to promote autophagy and inflammatory signaling. Cell Host Microbe 15 623635 [CrossRef] [PubMed] .
    [Google Scholar]
  14. Ko K. S., Kim Y. S., Lee M. Y., Shin S. Y., Jung D. S., Peck K. R., Song J. H. ( 2008;). Paenibacillus konsidensis sp. nov., isolated from a patient. Int J Syst Evol Microbiol 58 21642168 [CrossRef] [PubMed] .
    [Google Scholar]
  15. Logan N. A., Berge O., Bishop A. H., Busse H. J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L., other authors. ( 2009;). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59 21142121 [CrossRef] [PubMed] .
    [Google Scholar]
  16. Mesbah M., Premachandran U., Whitman W. B. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39 159167 [CrossRef].
    [Google Scholar]
  17. MIDI ( 1999). Sherlock Microbial Identification System, Operating Manual, Version 3.0 Newark, DE: MIDI, Inc;.
    [Google Scholar]
  18. Montes M. J., Mercadé E., Bozal N., Guinea J. ( 2004;). Paenibacillus antarcticus sp. nov., a novel psychrotolerant organism from the Antarctic environment. Int J Syst Evol Microbiol 54 15211526 [CrossRef] [PubMed] .
    [Google Scholar]
  19. Osman S., Satomi M., Venkateswaran K. ( 2006;). Paenibacillus pasadenensis sp. nov. and Paenibacillus barengoltzii sp. nov., isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol 56 15091514 [CrossRef] [PubMed] .
    [Google Scholar]
  20. Perrière G., Gouy M. ( 1996;). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78 364369 [CrossRef] [PubMed] .
    [Google Scholar]
  21. Priest F. G. ( 2009;). Family IV. Paenibacillaceae fam. nov. Genus I. Paenibacillus . . In Bergey's Manual of Systematic Bacteriology, pp. 269295. Edited by De Vos P., Garrity G. M., Jones D., Krieg N. R., Ludwig W., Rainey F. A., Schleifer K.-H., Whitman W. B. 3 The Firmicutes , 2nd edn. New York: Springer;.
    [Google Scholar]
  22. Roux V., Raoult D. ( 2004;). Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54 10491054 [CrossRef] [PubMed] .
    [Google Scholar]
  23. Saha P., Mondal A. K., Mayilraj S., Krishnamurthi S., Bhattacharya A., Chakrabarti T. ( 2005;). Paenibacillus assamensis sp. nov., a novel bacterium isolated from a warm spring in Assam, India. Int J Syst Evol Microbiol 55 25772581 [CrossRef] [PubMed] .
    [Google Scholar]
  24. Saitou N., Nei M. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406425 [PubMed].
    [Google Scholar]
  25. Sasser M. ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20 16.
    [Google Scholar]
  26. Scheldeman P., Goossens K., Rodriguez-Diaz M., Pil A., Goris J., Herman L., De Vos P., Logan N. A., Heyndrickx M. ( 2004;). Paenibacillus lactis sp. nov., isolated from raw and heat-treated milk. Int J Syst Evol Microbiol 54 885891 [CrossRef] [PubMed] .
    [Google Scholar]
  27. Schleifer K. H., Kandler O. ( 1972;). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36 407477 [PubMed].
    [Google Scholar]
  28. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. ( 1997;). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus . Int J Syst Bacteriol 47 289298 [CrossRef] [PubMed] .
    [Google Scholar]
  29. Smerda J., Sedlácek I., Pácová Z., Krejcí E., Havel L. ( 2006;). Paenibacillus sepulcri sp. nov., isolated from biodeteriorated mural paintings in the Servilia tomb. Int J Syst Evol Microbiol 56 23412344 [CrossRef] [PubMed] .
    [Google Scholar]
  30. Stackebrandt E., Goebel B. M. ( 1994;). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in Bacteriology. Int J Syst Bacteriol 44 846849 [CrossRef].
    [Google Scholar]
  31. Tamaoka J., Komagata K. ( 1984;). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25 125128 [CrossRef].
    [Google Scholar]
  32. Tindall B. J., Sikorski J., Smibert R. M., Kreig N. R. ( 2007;). Phenotypic characterization and the principles of comparative systematics. . In Methods for General and Molecular Microbiology, pp. 330393. Edited by Reddy C. A., Beveridge T. J., Breznak J. A., Marzluf G., Schmidt T. M. [CrossRef] L. R. Snyder American Society for Microbiology;.
    [Google Scholar]
  33. Traiwan J., Park M.-H., Kim W. ( 2011;). Paenibacillus puldeungensis sp. nov., isolated from a grassy sandbank. Int J Syst Evol Microbiol 61 670673 [CrossRef] [PubMed] .
    [Google Scholar]
  34. Velázquez E., de Miguel T., Poza M., Rivas R., Rosselló-Mora R., Villa T. G. ( 2004;). Paenibacillus favisporus sp. nov., a xylanolytic bacterium isolated from cow faeces. Int J Syst Evol Microbiol 54 5964 [CrossRef] [PubMed] .
    [Google Scholar]
  35. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P.A.D., Kandler O., Krichevsky M. I., Moore L. H., Moore W.E.C., Murray R.G.E., other authors. ( 1987;). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37 463464 [CrossRef].
    [Google Scholar]
  36. Wheeler R., Veyrier F., Werts C., Boneca I. G. ( 2014;). Peptidoglycan and Nod receptor. . In Glycoscience: Biology and Medicine, pp. 110. Edited by Taniguchi N., Endo T., Seeberger G. W., Wong C.-H. [CrossRef] Springer Reference;.
    [Google Scholar]
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