1887

Abstract

Four bacterial strains, 04HE-4-40, A4I-9, A4I-21 and AK15-027, were isolated from Heita Bay off Kamaishi in Japan. Based on 16S rRNA gene sequence analysis, the isolates were placed as a new lineage within the genus . The 16S rRNA gene sequence similarity values between the isolates and type strains of recognized species were less than 97 %. The DNA G+C contents of the isolates were about 38 mol%. The major respiratory quinone was Q-8, and the predominant cellular fatty acids were 16 : 17 and 16 : 0. The isolates were able to grow at 30 °C, unlike other species. Based on the results of the phylogenetic analysis and phenotypic characteristics and DNA–DNA hybridization data, the isolates represent a novel species, for which the name sp. nov. is proposed. The type strain is AK15-027 (=MBIC 06898=NCIMB 14416).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.65846-0
2008-10-01
2024-04-24
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/58/10/2253.html?itemId=/content/journal/ijsem/10.1099/ijs.0.65846-0&mimeType=html&fmt=ahah

References

  1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J.(1990). Basic local alignment search tool. J Mol Biol 215, 403–410.[CrossRef] [Google Scholar]
  2. Auman, A. J., Breezee, J. L., Gosink, J. J., Kämpfer, P. & Staley, J. T.(2006).Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic bacterium isolated from Arctic polar sea ice. Int J Syst Evol Microbiol 56, 1001–1007.[CrossRef] [Google Scholar]
  3. Barrow, G. I. & Feltham, R. K. A.(1993).Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
  4. Bowman, J. P. & McMeekin, T. A.(2005). Order X. Alteromonadales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part B, p. 443. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
  5. Brenner, D. J., Krieg, N. R., Staley, J. T. & Garrity, G. M. (editors)(2005). Genus XII. Psychromonas Mountfort, Rainey, Burghardt, Kaspar and Stackebrandt 1998b, 631VP emend Nogi, Kato and Horikoshi 2002, 1531 (Effective publication: Mountfort, Rainey, Burghardt, Kaspar and Stackebrandt 1998a, 237). In Bergey's Manual of Systematic Bacteriology, vol. 2, part B, pp. 478–480. New York: Springer.
  6. DSMZ(1993).Catalogue of Strains, 5th edn. Braunschweig: Gesellschaft für Biotechnologische Forschung.
  7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E.(1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224–229.[CrossRef] [Google Scholar]
  8. Groudieva, T., Grote, R. & Antranikian, G.(2003).Psychromonas arctica sp. nov., a novel psychrotolerant, biofilm-forming bacterium isolated from Spitzbergen. Int J Syst Evol Microbiol 53, 539–545.[CrossRef] [Google Scholar]
  9. Ingraham, J. L. & Stokes, J. L.(1959). Psychrophilic bacteria. Bacteriol Rev 23, 97–108. [Google Scholar]
  10. Ivanova, E. P., Flavier, A. & Christen, R.(2004). Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54, 1773–1788.[CrossRef] [Google Scholar]
  11. Katsuta, A., Adachi, K., Matsuda, S., Shizuri, Y. & Kasai, H.(2005).Ferrimonas marina sp. nov. Int J Syst Evol Microbiol 55, 1851–1855.[CrossRef] [Google Scholar]
  12. Kawasaki, K., Nogi, Y., Hishinuma, M., Nodasaka, Y., Matsuyama, H. & Yumoto, I.(2002).Psychromonas marina sp. nov., a novel halophilic, facultatively psychrophilic bacterium isolated from the coast of the Okhotsk Sea. Int J Syst Evol Microbiol 52, 1455–1459.[CrossRef] [Google Scholar]
  13. Morita, R. Y.(1975). Psychrophilic bacteria. Bacteriol Rev 39, 144–167. [Google Scholar]
  14. Mountfort, D. O., Rainey, F. A., Burghardt, J., Kaspar, H. F. & Stackebrandt, E.(1998).Psychromonas antarcticus gen. nov., sp. nov., a new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, Antarctica. Arch Microbiol 169, 231–238.[CrossRef] [Google Scholar]
  15. Nogi, Y., Kato, C. & Horikoshi, K.(2002).Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench. Int J Syst Evol Microbiol 52, 1527–1532.[CrossRef] [Google Scholar]
  16. Nogi, Y., Hosoya, S., Kato, C. & Horikoshi, K.(2007).Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench. Int J Syst Evol Microbiol 57, 1360–1364.[CrossRef] [Google Scholar]
  17. Saito, H. & Miura, K. I.(1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619–629.[CrossRef] [Google Scholar]
  18. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  19. Smibert, R. M. & Krieg, N. R.(1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  20. Stackebrandt, E. & Goebel, B. M.(1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef] [Google Scholar]
  21. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  23. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors(1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463–464.[CrossRef] [Google Scholar]
  24. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J.(1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697–703. [Google Scholar]
  25. Xu, Y., Nogi, Y., Kato, C., Liang, Z., Rüger, H.-J., Kegel, D. D. & Glansdorff, N.(2003).Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments. Int J Syst Evol Microbiol 53, 527–532.[CrossRef] [Google Scholar]
  26. Yasumoto-Hirose, M., Nishijima, M., Ngirchechol, M. K., Kanoh, K., Shizuri, Y. & Miki, W.(2006). Isolation of marine bacteria by in situ culture on media-supplemented polyurethane foam. Mar Biotechnol (NY) 8, 227–237.[CrossRef] [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.65846-0
Loading
/content/journal/ijsem/10.1099/ijs.0.65846-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error