Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia

References

1. Achouak, W., Christen, R., Barakat, M., Martel, M. H. & Heulin, T.(1999).Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique. Int J Syst Bacteriol 49, 787–794.[CrossRef] [Google Scholar]
2. Barrett, C. F. & Parker, M. A.(2005). Prevalence of Burkholderia sp. nodule symbionts on four mimosoid legumes from Barro Colorado Island, Panama. Syst Appl Microbiol 28, 57–65.[CrossRef] [Google Scholar]
3. Barrett, C. F. & Parker, M. A.(2006). Coexistence of Burkholderia, Cupriavidus and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica. Appl Environ Microbiol 72, 1198–1206.[CrossRef] [Google Scholar]
4. Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeay, M. & Vandamme, P.(2001).Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729–1735.[CrossRef] [Google Scholar]
5. Chen, W. M., James, E. K., Prescott, A. R., Kierans, M. & Sprent, J. I.(2003a). Nodulation of Mimosa spp. by the β-proteobacterium Ralstonia taiwanensis. Mol Plant Microbe Interact 16, 1051–1061.[CrossRef] [Google Scholar]
6. Chen, W. M., Moulin, L., Bontemps, C., Vandamme, P., Béna, G. & Boivin-Masson, C.(2003b). Legume symbiotic nitrogen fixation by β-Proteobacteria is widespread in nature. J Bacteriol 185, 7266–7272.[CrossRef] [Google Scholar]
7. Chen, W. M., de Faria, S. M., Straliotto, R., Pitard, R. M., Simoes-Araujo, J. L., Chou, J. H., Chou, Y. J., Barrios, E., Prescott, A. R. & other authors(2005a). Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South America. Appl Environ Microbiol 71, 7461–7471.[CrossRef] [Google Scholar]
8. Chen, W. M., James, E. K., Chou, J. H., Sheu, S. Y., Yang, S. Z. & Sprent, J. I.(2005b).β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytol 168, 661–675.[CrossRef] [Google Scholar]
9. Chen, W. M., James, E. K., Coenye, T., Chou, J. H., Barrios, E., de Faria, S. M., Elliott, G. N., Sheu, S. Y., Sprent, J. I. & Vandamme, P.(2006).Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America. Int J Syst Evol Microbiol 56, 1847–1851.[CrossRef] [Google Scholar]
10. Chen, W. M., de Faria, S. M., James, E. K., Elliott, G. N., Lin, K. Y., Chou, J. H., Sheu, S. Y., Cnockaert, M., Sprent, J. I. & Vandamme, P.(2007).Burkholderia nodosa sp. nov., isolated from root nodules of the woody Brazilian legumes Mimosa bimucronata and Mimosa scabrella. Int J Syst Evol Microbiol 57, 1055–1059.[CrossRef] [Google Scholar]
11. Elliott, G. N., Chen, W. M., Chou, J. H., Wang, H. C., Sheu, S. Y., Perin, L., Reis, V. M., Moulin, L., Simon, M. F. & other authors(2007).Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta. New Phytol 173, 168–180.[CrossRef] [Google Scholar]
12. Ezaki, T., Hashimoto, Y. & Yabuuchi, E.(1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224–229.[CrossRef] [Google Scholar]
13. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
14. Fitch, W. M. & Margoliash, E.(1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279–284.[CrossRef] [Google Scholar]
15. Goris, J., Dejonghe, W., Falsen, E., De Clerck, E., Geeraerts, B., Willems, A., Top, E. M., Vandamme, P. & De Vos, P.(2002). Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Syst Appl Microbiol 25, 340–352.[CrossRef] [Google Scholar]
16. Hall, T. A.(1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95–98. [Google Scholar]
17. Kimura, M.(1983).The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
18. Kumar, S., Tamura, K. & Nei, M.(2004).mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef] [Google Scholar]
19. Menna, P., Hungria, M., Barcellos, F. G., Bangel, E. V., Hess, P. N. & Martinez-Romero, E.(2006). Molecular phylogeny based on the 16S rRNA gene of elite rhizobial strains used in Brazilian commercial inoculants. Syst Appl Microbiol 29, 315–332.[CrossRef] [Google Scholar]
20. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
21. Moulin, L., Munive, A., Dreyfus, B. & Boivin-Masson, C.(2001). Nodulation of legumes by members of the β-subclass of proteobacteria. Nature 411, 948–950.[CrossRef] [Google Scholar]
22. Pitcher, D. G., Saunders, N. A. & Owen, R. J.(1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151–156.[CrossRef] [Google Scholar]
23. Pot, B., Vandamme, P. & Kersters, K.(1994). Analysis of electrophoretic whole-organism protein fingerprints. In Modern Microbial Methods (Chemical Methods in Prokaryotic Systematics Series), pp. 493–521. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
24. Powers, E. M.(1995). Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61, 3756–3758. [Google Scholar]
25. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
27. Vandamme, P. & Coenye, T.(2004). Taxonomy of the genus Cupriavidus: a tale of lost and found. Int J Syst Evol Microbiol 54, 2285–2289.[CrossRef] [Google Scholar]
28. Vandamme, P., Goris, J., Chen, W. M., de Vos, P. & Willems, A.(2002).Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov. nodulate the roots of tropical legumes. Syst Appl Microbiol 25, 507–512.[CrossRef] [Google Scholar]
29. Verma, S. C., Chowdhury, S. P. & Tripathi, A. K.(2004). Phylogeny based on 16S rRNA gene and nifH sequences of Ralstonia taiwanensis strains isolated from nitrogen-fixing nodules of Mimosa pudica, in India. Can J Microbiol 50, 313–322.[CrossRef] [Google Scholar]
30. Vincent, J. M. (editor)(1970).A Manual for the Practical Study of the Root-Nodule Bacteria. Oxford: Blackwell Scientific.
31. Yang, H. C., Im, W. T., Kim, K. K., An, D. S. & Lee, S. T.(2006).Burkholderia terrae sp. nov., isolated from a forest soil. Int J Syst Evol Microbiol 56, 453–457.[CrossRef] [Google Scholar]