1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 58, Issue 1

sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis Free

Abstract

An actinomycete isolated from an immunocompetent patient suffering from confluent and reticulated papillomatosis was characterized using a polyphasic taxonomic approach. The organism had chemotaxonomic and morphological properties that were consistent with its assignment to the genus and it formed a distinct phyletic line within the 16S rRNA gene tree. It shared a 16S rRNA gene sequence similarity of 98.3 % with its nearest neighbour, the type strain of , and could be distinguished from the type strains of all species using a combination of phenotypic properties. It is apparent from genotypic and phenotypic data that the organism represents a novel species in the genus . The name proposed for this taxon is ; the type strain is N 1280 (=DSM 44961=NCIMB 14145).

  • Published Online:
© SGM
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.65178-0
2008-01-01
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/58/1/68.html?itemId=/content/journal/ijsem/10.1099/ijs.0.65178-0&mimeType=html&fmt=ahah

References

  1. Bemer-Melchior, P., Haloun, A., Riezel, P. & Drugeon, H.(1999). Bacteremia due to Dietzia maris in an immunocompromised patient. Clin Infect Dis 29, 1338–1340.[CrossRef] [Google Scholar]
  2. Butler, W. R., Floyd, M. M., Brown, J., Toney, S. R., Daneshvar, M. I., Cooksey, R. C., Carr, J., Steigerwalt, A. G. & Charles, N.(2005). Novel mycolic acid-containing bacteria in the family Segniliparaceae gen. nov., including the genus Segniliparus gen. nov., with descriptions of Segniliparus rotundus sp. nov., and Segniliparus rugosus sp. nov. Int J Syst Evol Microbiol 55, 1615–1624.[CrossRef] [Google Scholar]
  3. Collins, M. D.(1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265–309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester, UK: John Wiley.
  4. Colquhoun, J. A., Mexson, J., Goodfellow, M., Ward, A. C., Horikoshi, K. & Bull, A. T.(1998). Novel rhodococci and other mycolate actinomycetes from the deep sea. Antonie van Leeuwenhoek 74, 27–40.[CrossRef] [Google Scholar]
  5. Duckworth, A. W., Grant, S., Grant, W. D., Jones, B. E. & Meijer, D.(1998).Dietzia natronolimnaea sp. nov., a new member of the genus Dietzia isolated from an East African soda lake. Extremophiles 2, 359–366.[CrossRef] [Google Scholar]
  6. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
  7. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  8. Felsenstein, J.(1993).phylip (phylogeny inference package) version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
  9. Fitch, W. M. & Margoliash, E.(1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279–284.[CrossRef] [Google Scholar]
  10. Goodfellow, M.(1971). Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69, 33–80.[CrossRef] [Google Scholar]
  11. Goodfellow, M. & Maldonado, L. A.(2006). The families Dietziaceae, Gordoniaceae, Nocardiaceae and Tsukamurellaceae. In The Prokaryotes, 3rd edn., Vol. 3, Archaea, Bacteria, Firmicutes, Actinomycetes, pp. 843–888. Edited by Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K. H. & Stackebrandt, E. New York: Springer.
  12. Gordon, R. E.(1967). The taxonomy of soil bacteria. In The Ecology of Soil Bacteria, pp. 293–321. Edited by T. R. G. Gray & D. Parkinson. Liverpool: Liverpool University Press.
  13. Gordon, R. E. & Mihm, J. M.(1962). Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98, 628–636. [Google Scholar]
  14. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N.(1974).Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54–63.[CrossRef] [Google Scholar]
  15. Hamid, M. E., Minnikin, D. E., Goodfellow, M. & Ridell, M.(1993). Thin-layer chromatographic analysis of glycolipids and mycolic acids from Mycobacterium farcinogenes, Mycobacterium senegalense and related taxa. Zentralbl Bakteriol 279, 354–367.[CrossRef] [Google Scholar]
  16. Hasegawa, T., Takizawa, M. & Tanida, S.(1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 329, 1319–1322. [Google Scholar]
  17. Isik, K., Chun, J., Hah, Y. C. & Goodfellow, M.(1999).Nocardia salmonicida nom. rev., a fish pathogen. Int J Syst Bacteriol 49, 833–837.[CrossRef] [Google Scholar]
  18. Jones, K. L.(1949). Fresh isolates of actinomycetes in which the presence of sporogeneous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141–145. [Google Scholar]
  19. Jukes, T. H. & Cantor, C. R.(1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21–132. Edited by H. N. Munro. New York: Academic Press.
  20. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M.(1998).Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Bacteriol 48, 59–68.[CrossRef] [Google Scholar]
  21. Kluge, A. G. & Farris, F. S.(1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1–32.[CrossRef] [Google Scholar]
  22. Kroppenstedt, R. M.(1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173–199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
  23. Lechevalier, M. P. & Lechevalier, H. A.(1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435–443.[CrossRef] [Google Scholar]
  24. Mayilraj, S., Suresh, S., Kroppenstedt, R. M. & Saini, H. S.(2006).Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas. Int J Syst Evol Microbiol 56, 1667–1671.[CrossRef] [Google Scholar]
  25. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H.(1984). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233–241.[CrossRef] [Google Scholar]
  26. Natarajan, S., Milne, D., Jones, A. L., Goodfellow, M., Perry, J. & Koerner, R. J.(2005). The etiological agent of confluent and reticulated papillomatosis? Br J Dermatol 153, 825–827.[CrossRef] [Google Scholar]
  27. Nesterenko, O. A., Nogina, T. M., Kasumova, S. A., Kvasnikov, E. I. & Batrakov, S. G.(1982).Rhodococcus luteus nom. nov. and Rhodococcus maris nom. nov. Int J Syst Bacteriol 32, 1–14.[CrossRef] [Google Scholar]
  28. Pidoux, O., Argenson, J.-N., Jacomo, V. & Drancourt, M.(2001). Molecular identification of a Dietzia maris hip prosthesis infection isolate. J Clin Microbiol 39, 2634–2636.[CrossRef] [Google Scholar]
  29. Rainey, F. A., Klatte, S., Kroppenstedt, R. M. & Stackebrandt, E.(1995).Dietzia, a new genus including Dietzia maris comb. nov., formerly Rhodococcus maris. Int J Syst Bacteriol 45, 32–36.[CrossRef] [Google Scholar]
  30. Rustigan, R. & Stuart, C. A.(1941). Decomposition of urea by Proteus. Proc Soc Exp Biol Med 47, 108–112.[CrossRef] [Google Scholar]
  31. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  32. Society for American Bacteriologists(1957).Manual for Microbiological Methods. New York: McGraw-Hill.
  33. Soddell, J. A., Stainsby, F. M., Eales, K. L., Kroppenstedt, R. M., Seviour, R. J. & Goodfellow, M.(2006).Millisia brevis gen. nov., sp. nov., an actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 56, 739–744.[CrossRef] [Google Scholar]
  34. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L.(1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479–491.[CrossRef] [Google Scholar]
  35. Staneck, J. L. & Roberts, G. D.(1974). Simplified approach to the identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226–231. [Google Scholar]
  36. Stevenson, I. L.(1967). Utilization of aromatic hydrocarbons by Arthrobacter spp. Can J Microbiol 13, 205–211.[CrossRef] [Google Scholar]
  37. Sutcliffe, I. C.(2000). Characterisation of a lipomannan lipoglycan from the mycolic acid containing actinomycete Dietzia maris. Antonie van Leeuwenhoek 78, 195–201.[CrossRef] [Google Scholar]
  38. Takami, H., Inoue, A., Fuji, F. & Horikoshi, K.(1997). Microbial flora in the deepest sea mud of the Mariana Trench. FEMS Microbiol Lett 152, 279–285.[CrossRef] [Google Scholar]
  39. Tsukamura, M.(1966). Adansonian classification of mycobacteria. J Gen Microbiol 45, 253–273.[CrossRef] [Google Scholar]
  40. Uchida, K., Kudo, T., Suzuki, K. & Nakase, T.(1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49–56.[CrossRef] [Google Scholar]
  41. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors(1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463–464.[CrossRef] [Google Scholar]
  42. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J.(1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743–1813. [Google Scholar]
  43. Yassin, A. F., Hupfer, H. & Schaal, K. P.(2006).Dietzia cinnamea sp. nov., a novel species of the genus Dietzia isolated from a perianal swab of a patient with a bone marrow transplant. Int J Syst Evol Microbiol 56, 641–645.[CrossRef] [Google Scholar]
  44. Yumoto, I., Nakamura, A., Iwata, H., Kojima, K., Kusumoto, K., Nodosaka, Y. & Matsuyama, H.(2002).Dietzia psychralcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile that grows on hydrocarbons. Int J Syst Evol Microbiol 52, 85–90. [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.65178-0
Loading
Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis
Int J Syst Evol Microbiol 58, 68 (2008); https://doi.org/10.1099/ijs.0.65178-0
/content/journal/ijsem/10.1099/ijs.0.65178-0
/content/journal/ijsem/10.1099/ijs.0.65178-0
Loading

Data & Media loading...

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error