1887

Abstract

Three strains of aerobic Gram-negative bacilli, two isolated from industrial water and freshwater (strains CCUG 48205 and CCUG 52220) and the third from soil (strain CCUG 52222), were analysed phenotypically and genotypically to clarify their taxonomic classification. 16S rRNA gene sequence analysis revealed that the three strains were located on the same phylogenetic branch, closely related to , the only recognized species in the genus. DNA–DNA hybridization studies, analyses of fatty acid contents, and physiological and biochemical tests supported the proposal of two novel species, sp. nov. (type strain, CCUG 48205=CECT 7248) and sp. nov. (type strain, CCUG 52222=CECT 7247).

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2008-01-01
2020-01-21
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References

  1. Amakata, D., Matsuo, Y., Shimono, K., Kweon Park, J., Soo Yun, C., Matsuda, H., Yokota, A. & Kawamukai, M. ( 2005; ). Mitsuaria chitosanitabida gen. nov., sp. nov., an aerobic, chitosanase-producing member of the ‘Betaproteobacteria’. Int J Syst Evol Microbiol 55, 1927–1932.[CrossRef]
    [Google Scholar]
  2. Aragno, M. & Schlegel, H. G. ( 1992; ). The mesophilic hydrogen-oxidizing (Knallgas) bacteria. In The Prokaryotes, vol. 1, pp. 344–384, 2nd edn. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
  3. Cowan, S. T. ( 1974; ). Cowan and Steel's Manual for the Identification of Medical Bacteria, 2nd edn. London: Cambridge University Press.
  4. Felsenstein, J. ( 1989; ). phylip – phylogeny inference package (version 3.2). Cladistics 5, 164–166.
    [Google Scholar]
  5. Gomila, M., Bowien, B., Falsen, E., Moore, E. R. B. & Lalucat, J. ( 2007; ). Description of Pelomonas aquatica sp. nov. and Pelomonas puraquae sp. nov., isolated from industrial and haemodialysis water. Int J Syst Evol Microbiol 57, 2629–2635.[CrossRef]
    [Google Scholar]
  6. Jukes, T. H. & Cantor, C. R. ( 1969; ). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21–132. Edited by H. N. Munro. New York: Academic Press.
  7. Kalmbach, S., Manz, W., Wecke, J. & Szewzyk, U. ( 1999; ). Aquabacterium gen. nov., with description of Aquabacterium citratiphilum sp. nov., Aquabacterium parvum sp. nov. and Aquabacterium commune sp. nov., three in situ dominant bacterial species from the Berlin drinking water system. Int J Syst Bacteriol 49, 769–777.[CrossRef]
    [Google Scholar]
  8. Lalucat, J. ( 1988; ). Analysis of refractile (R) bodies. In Methods in Microbiology – Electron Microscopy in Microbiology, vol. 20, pp. 79–90. Edited by F. Mayer. London: Academic Press.
  9. Malmqvist, A., Welander, T., Moore, E., Ternström, A., Molin, G. & Stenström, I.-M. ( 1994; ). Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor. Syst Appl Microbiol 17, 58–64.[CrossRef]
    [Google Scholar]
  10. Marmur, J. ( 1961; ). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef]
    [Google Scholar]
  11. Page, R. D. M. ( 1996; ). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357–358.
    [Google Scholar]
  12. Reasoner, D. J. & Geldreich, E. E. ( 1985; ). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1–7.
    [Google Scholar]
  13. Spring, S. ( 2006; ). The genera Leptothrix and Sphaerotilus. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 5, pp. 758–777. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
  14. Suyama, T., Shigematsu, T., Takaichi, S., Nodasaka, Y., Fujikawa, S., Hosoya, H., Tokiwa, Y., Kanagawa, T. & Hanada, S. ( 1999; ). Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the β-subclass of the Proteobacteria. Int J Syst Bacteriol 49, 449–457.[CrossRef]
    [Google Scholar]
  15. Suyama, T., Shigematsu, T., Suzuki, T., Tokiwa, Y., Kanagawa, T., Nagashima, K. V. P. & Hanada, S. ( 2002; ). Photosynthetic apparatus in Roseateles depolymerans 61A is transcriptionally induced by carbon limitation. Appl Environ Microbiol 68, 1665–1673.[CrossRef]
    [Google Scholar]
  16. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. ( 1997; ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef]
    [Google Scholar]
  17. Wen, A., Fegan, M., Hayward, C., Chakraborty, S. & Sly, L. I. ( 1999; ). Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov. Int J Syst Bacteriol 49, 567–576.[CrossRef]
    [Google Scholar]
  18. Willems, A. & Gillis, M. ( 2005; ). Family IV. Comamonadaceae Willems, De Ley, Gillis and Kersters 1991a, 447VP. In Bergey's Manual of Systematic Bacteriology, 2nd edn. The Proteobacteria: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, vol. 2, part C, pp. 686–763. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
  19. Willems, A., Gillis, M. & De Ley, J. ( 1991; ). Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov., comb. nov., and phylogenetic relationships with Leptothrix, Sphaerotilus natans, Pseudomonas saccharophila, and Alcaligenes latus. Int J Syst Bacteriol 41, 65–73.[CrossRef]
    [Google Scholar]
  20. Xie, C.-H. & Yokota, A. ( 2005; ). Reclassification of Alcaligenes latus strains IAM 12599T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australiaca sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. Int J Syst Evol Microbiol 55, 2419–2425.[CrossRef]
    [Google Scholar]
  21. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. ( 1998; ). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179–186.[CrossRef]
    [Google Scholar]
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Carbon source utilization (Biolog) by strains of species of the genus . [PDF](70 KB)

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DNA-DNA hybridization data. [PDF](13 KB)

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16S rRNA gene sequence distance matrix. [PDF](17 KB)

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