1887

Abstract

A Gram-positive, rod- or coccoid-shaped bacterial strain, DS-17, was isolated from a soil in Dokdo, Korea, and its taxonomic position was investigated by using a polyphasic approach. Strain DS-17 grew optimally at around pH 8.0 and 30 °C in the presence of 0.5–1.0 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain DS-17 belonged to the genus . The chemotaxonomic properties of strain DS-17 were consistent with those of the genus : the cell-wall peptidoglycan type was based on -2,6-diaminopimelic acid, MK-8(H) was the predominant menaquinone and iso-C, C 8 and C were the major fatty acids. The DNA G+C content was 71.5 mol%. Strain DS-17 exhibited 16S rRNA gene sequence similarity values of 94.5–96.9 % to the type strains of recognized species. Strain DS-17 could be distinguished from recognized species by differences in phenotypic characteristics. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain DS-17 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is DS-17 (=KCTC 19217=JCM 14582).

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2007-11-01
2020-01-25
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References

  1. An, D.-S., Im, W.-T., Lee, S.-T. & Yoon, M.-H. ( 2007; ). Nocardioides panacihumi sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 57, 2143–2146.[CrossRef]
    [Google Scholar]
  2. Choi, D. H., Kim, H. M., Noh, J.-H. & Cho, B. C. ( 2007; ). Nocardioides marinus sp. nov. Int J Syst Evol Microbiol 57, 775–779.[CrossRef]
    [Google Scholar]
  3. Komagata, K. & Suzuki, K. ( 1987; ). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161–207.
    [Google Scholar]
  4. Kubota, M., Kawahara, K., Sekiya, K., Uchida, T., Hattori, Y., Futamata, H. & Hiraishi, A. ( 2005; ). Nocardioides aromaticivorans sp. nov., a dibenzofuran-degrading bacterium isolated from dioxin-polluted environments. Syst Appl Microbiol 28, 165–174.[CrossRef]
    [Google Scholar]
  5. Lawson, P. A., Collins, M. D., Schumann, P., Tindall, B. J., Hirsch, P. & Labrenz, M. ( 2000; ). New ll-diaminopimelic acid-containing actinomycetes from hypersaline, heliothermal and meromictic Antarctic Ekho Lake: Nocardioides aquaticus sp. nov. and Friedmanniella lacustris sp. nov. Syst Appl Microbiol 23, 219–229.[CrossRef]
    [Google Scholar]
  6. Lechevalier, M. P. & Lechevalier, H. A. ( 1970; ). A critical evaluation of the genera of aerobic actinomycetes. In The Actinomycetales, pp. 393–405. Edited by H. Prauser. Jena: VEB Gustav Fischer.
  7. Lee, S. D. ( 2007; ). Nocardioides furvisabuli sp. nov., isolated from black sand. Int J Syst Evol Microbiol 57, 35–39.[CrossRef]
    [Google Scholar]
  8. Prauser, H. ( 1976; ). Nocardioides, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26, 58–65.[CrossRef]
    [Google Scholar]
  9. Stackebrandt, E. & Goebel, B. M. ( 1994; ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef]
    [Google Scholar]
  10. Tamura, T. & Yokota, A. ( 1994; ). Transfer of Nocardioides fastidiosa Collins and Stackebrandt 1989 to the genus Aeromicrobium as Aeromicrobium fastidiosum comb. nov. Int J Syst Bacteriol 44, 608–611.[CrossRef]
    [Google Scholar]
  11. Urzì, C., Salamone, P., Schumann, P. & Stackebrandt, E. ( 2000; ). Marmoricola aurantiacus gen. nov., sp. nov., a coccoid member of the family Nocardioidaceae isolated from a marble statue. Int J Syst Evol Microbiol 50, 529–536.[CrossRef]
    [Google Scholar]
  12. Wang, Y. M., Zhang, Z. S., Xu, X. L., Ruan, J. S. & Wang, Y. ( 2001; ). Actinopolymorpha singaporensis gen. nov., sp. nov., a novel actinomycete from the tropical rainforest of Singapore. Int J Syst Evol Microbiol 51, 467–473.
    [Google Scholar]
  13. Yi, H. & Chun, J. ( 2004; ). Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 1295–1299.[CrossRef]
    [Google Scholar]
  14. Yoon, J.-H., Rhee, S.-K., Lee, J.-S., Park, Y.-H. & Lee, S. T. ( 1997; ). Nocardioides pyridinolyticus sp. nov., a pyridine-degrading bacterium isolated from the oxic zone of an oil shale column. Int J Syst Bacteriol 47, 933–938.[CrossRef]
    [Google Scholar]
  15. Yoon, J.-H., Cho, Y.-G., Lee, S. T., Suzuki, K.-I., Nakase, T. & Park, Y.-H. ( 1999; ). Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium. Int J Syst Bacteriol 49, 675–680.[CrossRef]
    [Google Scholar]
  16. Yoon, J.-H., Kim, I.-G., Kang, K. H., Oh, T.-K. & Park, Y.-H. ( 2004; ). Nocardioides aquiterrae sp. nov., isolated from groundwater in Korea. Int J Syst Evol Microbiol 54, 71–75.[CrossRef]
    [Google Scholar]
  17. Yoon, J.-H., Kim, I.-G., Lee, M.-H., Lee, C.-H. & Oh, T.-K. ( 2005a; ). Nocardioides alkalitolerans sp. nov., isolated from an alkaline serpentinite soil in Korea. Int J Syst Evol Microbiol 55, 809–814.[CrossRef]
    [Google Scholar]
  18. Yoon, J.-H., Kim, I.-G., Lee, M.-H. & Oh, T.-K. ( 2005b; ). Nocardioides kribbensis sp. nov., isolated from an alkaline soil. Int J Syst Evol Microbiol 55, 1611–1614.[CrossRef]
    [Google Scholar]
  19. Yoon, J.-H., Lee, C.-H. & Oh, T.-K. ( 2006a; ). Nocardioides lentus sp. nov., isolated from an alkaline soil. Int J Syst Evol Microbiol 56, 271–275.[CrossRef]
    [Google Scholar]
  20. Yoon, J.-H., Lee, J.-K., Jung, S.-Y., Kim, J.-A., Kim, H.-K. & Oh, T.-K. ( 2006b; ). Nocardioides kongjuensis sp. nov., an N-acylhomoserine lactone-degrading bacterium. Int J Syst Evol Microbiol 56, 1783–1787.[CrossRef]
    [Google Scholar]
  21. Yoon, J.-H., Kang, S.-J., Lee, C.-H. & Oh, T.-K. ( 2007; ). Nocardioides insulae sp. nov., isolated from soil. Int J Syst Evol Microbiol 57, 136–140.[CrossRef]
    [Google Scholar]
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vol. , part 11, pp. 2472 - 2475

Differential phenotypic characteristics of strain DS-17 ( sp. nov.) and other species. [PDF](89 KB)



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