1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 57, Issue 8

gen. nov., sp. nov., a member of the family isolated from the marine polychaete Free

Abstract

A Gram-negative, yellow-coloured, non-motile, chemoheterotrophic, strictly aerobic, rod-shaped bacterium, designated IMCC1616, was isolated from the marine polychaete inhabiting tidal flat sediment of the Yellow Sea, and characterized by a polyphasic approach. The temperature, pH and NaCl ranges for growth were 3–37 °C, pH 5.0–11.0 and 0.5–7.5 %. Based on 16S rRNA gene sequence similarity analyses, the strain was most closely related to members of the genera (90.7 %), (89.2–90.4 %) and (88.4–90.2 %). Phylogenetic analysis using three treeing algorithms based on 16S rRNA gene sequences indicated that the strain formed a distinct lineage within the family . The DNA G+C content of the strain was 40.1 mol% and the predominant cellular fatty acids were iso-C (16.5 %), anteiso-C (10.9 %), iso-C 3-OH (8.8 %) and iso-C 9 (8.2 %). The DNA G+C content, large amount of iso-C 9 and several phenotypic characteristics, including growth temperature and catalase activity, differentiated the strain from other related genera in the family. Therefore, from the taxonomic evidence collected in this study, it is proposed that strain IMCC1616 represents a new genus and species named gen. nov., sp. nov. The type strain of is strain IMCC1616 (=KCCM 42379 =NBRC 102041).

  • Published Online:
SGM
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.65060-0
2007-08-01
2024-04-16
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/57/8/1679.html?itemId=/content/journal/ijsem/10.1099/ijs.0.65060-0&mimeType=html&fmt=ahah

References

  1. Bernardet J. F., Nakagawa Y., Holmes B. 2002; Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070 [CrossRef]
     [Google Scholar]
  2. Cho J. C., Giovannoni S. J. 2003; Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae . Syst Appl Microbiol 26:76–83 [CrossRef]
     [Google Scholar]
  3. Choi D. H., Cho B. C. 2006; Lutibacter litoralis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. Int J Syst Evol Microbiol 56:771–776 [CrossRef]
     [Google Scholar]
  4. Choi D. H., Kim Y. G., Hwang C. Y., Yi H., Chun J., Cho B. C. 2006; Tenacibaculum litoreum sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 56:635–640 [CrossRef]
     [Google Scholar]
  5. Frette L., Jørgensen N. O. G., Irming H., Kroer N. 2004; Tenacibaculum skagerrakense sp. nov., a marine bacterium isolated from the pelagic zone in Skagerrak, Denmark. Int J Syst Evol Microbiol 54:519–524 [CrossRef]
     [Google Scholar]
  6. Garrity G. M., Holt J. G. 2001; The road map to the Manual . In Bergey's Manual of Systematic Bacteriology . , 2nd edn. vol 1 pp 119–166 Edited by Boone D. R., Castenholz R. W., Garrity G. M. New York: Springer;
  7. Gosink J. J., Woese C. R., Staley J. T. 1998; Polaribacter gen. nov., with three new species, P.irgensii sp. nov., P. franzmannii sp.nov. and P. filamentus sp. nov.,gas vacuolate polar marine bacteria of the Cytophaga – Flavobacterium – Bacteroides group and reclassification of ‘ Flectobacillus glomeratus ’ as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48:223–235 [CrossRef]
     [Google Scholar]
  8. Hansen G. H., Bergh Ø., Michaelsen J., Knappskog D. 1992; Flexibacter ovolyticus sp. nov., a pathogen of eggs and larvae of Atlantic halibut, Hippoglossus hippoglossus L. Int J Syst Bacteriol 42:451–458 [CrossRef]
     [Google Scholar]
  9. Jorgensen J. H., Turnidge J. D., Washington J. A. 1999; Antibacterial susceptibility tests: dilution and disk diffusion methods. In Manual of Clinical Microbiology pp 1526–1543 Edited by Murray P. R., Baron E. J., Pfaller M. A., Tenover F. C., Yolken R. H. Washington, DC: American Society for Microbiology;
     [Google Scholar]
  10. Jung S. Y., Oh T. K., Yoon J. H. 2006; Tenacibaculum aestuarii sp. nov., isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 56:1577–1581 [CrossRef]
     [Google Scholar]
  11. Khan S. T., Nakagawa Y., Harayama S. 2006; Krokinobacter gen. nov., with three novel species, in the family Flavobacteriaceae . Int J Syst Evol Microbiol 56:323–328 [CrossRef]
     [Google Scholar]
  12. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar Buchner A., Lai T., Steppi S. other authors 2004; arb: a software environment for sequence data. Nucleic Acids Res 32:1363–1371 [CrossRef]
     [Google Scholar]
  13. McCammon S. A., Bowman J. P. 2000 Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp.nov. and Flavobacterium xanthum sp. nov., nom.rev. and reclassification of [ Flavobacterium ] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 1055–1063 [CrossRef]
  14. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
     [Google Scholar]
  15. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Kalinovskaya N. I., Mikhailov V. V., Kim I. S., Bae K. S. 2005; Polaribacter butkevichii sp. nov., a novel marine mesophilic bacterium of the family Flavobacteriaceae . Curr Microbiol 51:408–412 [CrossRef]
     [Google Scholar]
  16. Reichenbach H. 1989; Order I. Cytophagales Leadbetter 1974, 99AL . In Bergey's Manual of Systematic Bacteriology vol 3 pp 2011–2013 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
     [Google Scholar]
  17. Suzuki M., Nakagawa Y., Harayama S., Yamamoto S. 2001; Phylogenetic analysis and taxonomic study of marine Cytophaga -like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb.nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp.nov. and Tenacibaculum amylolyticum sp. nov.. Int J Syst Evol Microbiol 51:1639–1652 [CrossRef]
     [Google Scholar]
  18. Swofford D. L. 2002 paup*: phylogenetic analysis using parsimony (*and other methods), version 4 Sunderland, MA: Sinauer Associates;
     [Google Scholar]
  19. Teather R. M., Wood P. J. 1982; Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43:777–780
     [Google Scholar]
  20. Wakabayashi H., Hikida M., Masumura K. 1986; Flexibacter maritimus sp. nov., a pathogen of marine fishes. Int J Syst Bacteriol 36:396–398 [CrossRef]
     [Google Scholar]
  21. Yoon J. H., Kang S. J., Oh T. K. 2005; Tenacibaculum lutimaris sp. nov., isolated from a tidal flat in the Yellow Sea, Korea. Int J Syst Evol Microbiol 55:793–798 [CrossRef]
     [Google Scholar]
  22. Yoon J. H., Kang S. J., Oh T. K. 2006; Polaribacter dokdonensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 56:1251–1255 [CrossRef]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.65060-0
Loading
Lutimonas vermicola gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine polychaete Periserrula leucophryna
Int J Syst Evol Microbiol 57, 1679 (2007); https://doi.org/10.1099/ijs.0.65060-0
/content/journal/ijsem/10.1099/ijs.0.65060-0
/content/journal/ijsem/10.1099/ijs.0.65060-0
Loading

Data & Media loading...

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error