1887

Abstract

Two strains of lactic acid bacteria, strains NRIC 0689 and NRIC 0690, were isolated from a compost of distilled shochu residue in Japan. The isolates showed quite low sequence similarity to known species of lactic acid bacteria on the basis of 16S rRNA gene sequence; the highest sequence similarities to NRIC 0689 were shown by the type strains of , , , and (92.9, 92.9, 92.8, 92.6 and 92.5 %, respectively). The isolates formed a distinct subcluster in the phylogenetic cluster. Levels of DNA–DNA relatedness revealed that the isolates belonged to the same taxon. Therefore, the isolates represent a novel species, for which the name sp. nov. is proposed. The type strain is NRIC 0689 (=JCM 14202=DSM 18527).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.64743-0
2007-04-01
2020-01-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/57/4/870.html?itemId=/content/journal/ijsem/10.1099/ijs.0.64743-0&mimeType=html&fmt=ahah

References

  1. Cavalli-Sforza, L. L. & Edwards, A. W. F. ( 1967; ). Phylogenetic analysis models and estimation procedures. Am J Hum Genet 19, 233–257.
    [Google Scholar]
  2. Collins, M. D., Rodrigues, U. M., Ash, C., Aguirre, M., Farrow, J. A. E., Martinez-Murcia, A., Philips, B. A., Williams, A. M. & Wallbanks, S. ( 1991; ). Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 77, 5–12.[CrossRef]
    [Google Scholar]
  3. Endo, A. & Okada, S. ( 2005; ). Lactobacillus satsumensis sp. nov., isolated from mashes of shochu, a traditional Japanese distilled spirit made from fermented rice and other starchy materials. Int J Syst Evol Microbiol 55, 83–85.[CrossRef]
    [Google Scholar]
  4. Endo, A. & Okada, S. ( 2006; ). Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue. Int J Syst Evol Microbiol 56, 2345–2348.[CrossRef]
    [Google Scholar]
  5. Endo, A. & Okada, S. ( 2007; ). Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue. Int J Syst Evol Microbiol 57, 708–712.[CrossRef]
    [Google Scholar]
  6. Ezaki, T., Yamamoto, N., Ninomiya, K., Suzuki, S. & Yabuuchi, E. ( 1983; ). Transfer of Peptococcus indolicus, Peptococcus asaccharolyticus, and Peptococcus magnus to the genus Peptostreptococcus and proposal of Peptostreptococcus tetradius sp. nov. Int J Syst Bacteriol 33, 683–698.[CrossRef]
    [Google Scholar]
  7. Felsenstein, J. ( 1985; ). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef]
    [Google Scholar]
  8. Felsenstein, J. ( 2005; ). phylip (Phylogeny Inference Package), version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
  9. Hammes, W. P. & Hertel, C. ( 2006; ). The genera Lactobacillus and Carnobacterium. In The Prokaryotes, 3rd edn, vol. 4, pp. 320–403. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
  10. Kimura, M. ( 1980; ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.[CrossRef]
    [Google Scholar]
  11. Kluge, A. G. & Farris, J. S. ( 1969; ). Quantitative phyletics and the evolution of the anurans. Syst Zool 18, 1–32.[CrossRef]
    [Google Scholar]
  12. Leisner, J. J., Vancanneyt, M., Goris, J., Christensen, H. & Rusul, G. ( 2000; ). Description of Paralactobacillus selangorensis gen. nov., sp. nov., a new lactic acid bacterium isolated from chili bo, a Malaysian food ingredient. Int J Syst Evol Microbiol 50, 19–24.[CrossRef]
    [Google Scholar]
  13. Marmur, J. ( 1961; ). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Evol 3, 208–218.
    [Google Scholar]
  14. Saitou, N. & Nei, M. ( 1987; ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
    [Google Scholar]
  15. Schleifer, K. H. & Ludwig, W. ( 1995; ). Phylogeny of the genus Lactobacillus and related genera. Syst Appl Microbiol 18, 461–467.[CrossRef]
    [Google Scholar]
  16. Stackebrandt, E. & Goebel, B. M. ( 1994; ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef]
    [Google Scholar]
  17. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. ( 1997; ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.64743-0
Loading
/content/journal/ijsem/10.1099/ijs.0.64743-0
Loading

Data & Media loading...

Supplements

vol. , part 4, pp. 870 - 872

Phylogenetic trees contructed using the maximum-likelihood method (Fig. S1) and the maximum-parsimony method (Fig. S2) showing the phylogenetic relationship of strains NRIC 0689 and NRIC 0690 to related species based on 16S rRNA gene sequences. [PDF](19 KB)



PDF

Most cited articles

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error