Galbibacter mesophilus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae

References

1. Abell G. C. J., Bowman J. P. 2005; Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol 51:265–277 [CrossRef]
   [Google Scholar]
2. Adachi J., Hasegawa M. 1996; molphy Version 2.3-Programs for Molecular Phylogenetics Based on Maximum Likelihood . Computer Science Monograph no: 28 Tokyo: Institute of Statistical Mathematics;
   [Google Scholar]
3. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. 1990; Basic local alignment search tool. J Mol Biol 215:403–410 [CrossRef]
   [Google Scholar]
4. Bernardet J.-F. 1998; Cytophaga , Flavobacterium , Flexibacter and Chryseobacterium infections in cultured marine fish. Fish Pathol 33:229–238 [CrossRef]
   [Google Scholar]
5. Bernardet J.-F., Nakagawa Y., Holmes B. 2002; Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070 [CrossRef]
   [Google Scholar]
6. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci U S A 75:4801–4805 [CrossRef]
   [Google Scholar]
7. Brown M. V., Bowman J. P. 2001; A molecular phylogenetic survey of sea-ice microbial communities (SIMCO. FEMS Microbiol Ecol 35:267–275 [CrossRef]
   [Google Scholar]
8. Cho J.-C., Giovannoni S. J. 2004; Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol 54:1101–1106 [CrossRef]
   [Google Scholar]
9. Cottrell M. T., Kirchman D. L. 2000; Natural assemblages of marine proteobacteria and members of the Cytophaga–Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl Environ Microbiol 66:1692–1697 [CrossRef]
   [Google Scholar]
10. Cowan S. T., Steel K. J. 1993 Manual for the Identification of Medical Bacteria , 3rd edn. London: Cambridge University Press;
    [Google Scholar]
11. Davey K. E., Kirby R. R., Turley C. M., Weightman A. J., Fry J. C. 2001; Depth variation of bacterial extracellular enzyme activity and population diversity in the northeastern North Atlantic Ocean. Deep-Sea Res Part II 48:1003–1017 [CrossRef]
    [Google Scholar]
12. Fautz E., Reichenbach H. 1980; A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8:87–91 [CrossRef]
    [Google Scholar]
13. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
14. Glöckner F. O., Fuchs B. M., Amann R. 1999; Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721–3726
    [Google Scholar]
15. Khan S. T., Nakagawa Y., Harayama S. 2006a; Krokinobacter gen. nov., with three novel species, in the family Flavobacteriaceae . Int J Syst Evol Microbiol 56:323–328 [CrossRef]
    [Google Scholar]
16. Khan S. T., Nakagawa Y., Harayama S. 2006b; Sediminicola luteus gen. nov., sp. nov. a novel member of the family Flavobacteriaceae . Int J Syst Evol Microbiol 56:841–845 [CrossRef]
    [Google Scholar]
17. Khan S. T., Nakagawa Y., Harayama S. 2006c; Sandarakinotalea sediminis gen. nov., sp. nov. a novel member of the family Flavobacteriaceae . Int J Syst Evol Microbiol 56:959–963 [CrossRef]
    [Google Scholar]
18. Khan S. T., Nakagawa Y., Harayama S. 2007; Sediminibacter furfurosus gen. nov., sp. nov. and Gilvibacter sediminis gen. nov., sp. nov. novel members of the family Flavobacteriaceae . Int J Syst Evol Microbiol 57:265–269 [CrossRef]
    [Google Scholar]
19. Maeda T., Murakami M., Ohsugi S., Furushita M., Mitsutani A., Shiba T. 1998; Perspectives of the development of 16S rDNA probe specific for algicidal and/or algal-lytic gliding bacteria. Fish Sci 64:861–865
    [Google Scholar]
20. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
21. Minamisawa K. 1990; Division of rhizobitoxine-producing and hydrogen-uptake positive strains of Bradyrhizobium japonicum by nifDKE sequence divergence. Plant Cell Physiol 31:81–89
    [Google Scholar]
22. Nakagawa Y., Yamasato K. 1993; Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139:1155–1161 [CrossRef]
    [Google Scholar]
23. Nedashkovskaya O. I., Suzuki M., Vysotskii M. V., Mikhailov V. V. 2003; Vitellibacter vladivostokensis gen. nov., sp. nov. a new member of the phylum Cytophaga–Flavobacterium–Bacteroides . Int J Syst Evol Microbiol 53:1281–1286 [CrossRef]
    [Google Scholar]
24. Nedashkovskaya O. I., Kim S. B., Han S. K., Rhee M. S., Lysenko A. M., Falsen E., Frolova G. M., Mikhailov V. V., Bae S. K. 2004; Ulvibacter litoralis gen. nov., sp. nov. a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata . Int J Syst Evol Microbiol 54:119–123 [CrossRef]
    [Google Scholar]
25. Nedashkovskaya O. I., Vancanneyt M., Dawyndt P., Engelbeen K., Vandemeulebroecke K., Cleenwerck I., Hoste B., Mergaert J., Tan T.-L. other authors 2005; Reclassification of [ Cytophaga ] marinoflava Reichenbach 1989 as Leeuwenhoekiella marinoflava gen.nov., comb. nov. and description of Leeuwenhoekiella aequorea sp. nov. Int J Syst Evol Microbiol 55:1033–1038 [CrossRef]
    [Google Scholar]
26. Perry L. B. 1973; Gliding motility in some non-spreading flexibacteria. J Appl Bacteriol 36:227–232 [CrossRef]
    [Google Scholar]
27. Pinhassi J., Bowman J. P., Nedashkovskaya O. I., Lekunberri I., Gomez-Consarnau L., Pedrós-Alió C. 2006; Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae . Int J Syst Evol Microbiol 56:1489–1493 [CrossRef]
    [Google Scholar]
28. Rüger H.-J., Krambeck H.-J. 1994; Evaluation of the BIOLOG substrate metabolism system for classification of marine bacteria. Syst Appl Microbiol 17:281–288 [CrossRef]
    [Google Scholar]
29. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
30. Swofford D. L. 2000 paup*: Phylogenetic analysis using parsimony (* and other methods), version 4 Sunderland, MA: Sinauer Associates;
    [Google Scholar]
31. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]