sp. nov. and sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue Free

Abstract

Five strains of lactic acid bacteria were isolated from a compost of distilled shochu residue in Japan. The isolates were separated into two groups on the basis of 16S rRNA gene sequence similarity, and two subclusters were formed that comprised micro-organisms closely related to , , , , and . DNA–DNA relatedness results revealed that the isolates could be separated into two groups, and these groups correlated well with the subclusters generated using the phylogenetic analysis. Moreover, the levels of DNA–DNA relatedness showed clear separation of the two groups from their phylogenetic relatives. Therefore, the two groups represent two novel species, for which the names sp. nov. (type strain NRIC 0676=JCM 14108=DSM 18382) and sp. nov. (type strain NRIC 0677=JCM 14109=DSM 18390) are proposed.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.64618-0
2007-04-01
2024-03-28
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/57/4/708.html?itemId=/content/journal/ijsem/10.1099/ijs.0.64618-0&mimeType=html&fmt=ahah

References

  1. Cavalli-Sforza L. L., Edwards A. W. F. 1967; Phylogenetic analysis models and estimation procedures. Am J Hum Genet 19:233–257
    [Google Scholar]
  2. Endo A., Okada S. 2005; Lactobacillus satsumensis sp. nov., isolated from mashes of shochu, a traditional Japanese distilled spirit made from fermented rice and other starchy materials. Int J Syst Evol Microbiol 55:83–85 [CrossRef]
    [Google Scholar]
  3. Endo A., Okada S. 2006; Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue. Int J Syst Evol Microbiol 56:2345–2348 [CrossRef]
    [Google Scholar]
  4. Ezaki T., Yamamoto N., Ninomiya K., Suzuki S., Yabuuchi E. 1983; Transfer of Peptococcus indolicus , Peptococcus asaccharolyticus , and Peptococcus magnus to the genus Peptostreptococcus and proposal of Peptostreptococcus tetradius sp. nov. Int J Syst Bacteriol 33:683–698 [CrossRef]
    [Google Scholar]
  5. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
    [Google Scholar]
  6. Farrow J. A. E., Phillips B. A., Collins M. D. 1988; Nucleic acid studies on some heterofermentative lactobacilli: description of Lactobacillus malefermentans sp.nov. and Lactobacillus parabuchneri sp. nov. FEMS Microbiol Lett 55:163–168 [CrossRef]
    [Google Scholar]
  7. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
  8. Felsenstein J. 2005 phylip (phylogeny inference package), version 3.65. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
    [Google Scholar]
  9. Fujisawa T., Benno Y., Yaeshima T., Mitsuoka T. 1992; Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus ; (Nakamura 1981 Int J Syst Bacteriol 42:487–491 [CrossRef]
    [Google Scholar]
  10. Kandler O., Kunath P. 1983; Lactobacillus kefir sp. nov., a component of the microflora of kefir. Syst Appl Microbiol 4:286–294 [CrossRef]
    [Google Scholar]
  11. Kandler O., Weiss N. 1986; Genus Lactobacillus Beijerinck 1901, 212AL . In Bergey's Manual of Systematic Bacteriology vol 2 pp  1209–1234 Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  12. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
  13. Kluge A. G., Farris J. S. 1969; Quantitative phyletics and the evolution of the anurans. Syst Zool 18:1–32 [CrossRef]
    [Google Scholar]
  14. Krooneman J., Faber F., Alderkamp A. C., Oude Elferink S. J. H. W., Deiehuis F., Cleenwerck I., Swings J., Gottschal J. C., Vancanneyt M. 2002; Lactobacillus diolivorans sp. nov., a 1,2-propanediol-degrading bacterium isolated from aerobically stable maize silage. Int J Syst Evol Microbiol 52:639–646
    [Google Scholar]
  15. Marmur J. 1961; A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Evol 3:208–218
    [Google Scholar]
  16. Naser S. M., Hagen K. E., Vancanneyt M., Cleenwerck I., Swings J., Tompkins T. A. 2006; Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980). Int J Syst Evol Microbiol 56:355–360 [CrossRef]
    [Google Scholar]
  17. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  18. Schleifer K. H., Ludwig W. 1995; Phylogeny of the genus Lactobacillus and related genera. Syst Appl Microbiol 18:461–467 [CrossRef]
    [Google Scholar]
  19. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
  20. Takizawa S., Kojima S., Tamura S., Fujinaga S., Benno Y., Nakase T. 1994; Lactobacillus kefirgranum sp. nov. and Lactobacillus parakefir sp. nov., two new species from kefir grains. Int J Syst Bacteriol 44:435–439 [CrossRef]
    [Google Scholar]
  21. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [CrossRef]
    [Google Scholar]
  22. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.64618-0
Loading
/content/journal/ijsem/10.1099/ijs.0.64618-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF

Most cited Most Cited RSS feed