1887

Abstract

A number of marine bacteria isolated from young biofilms were characterized as belonging to the family . The taxonomic characterization of strain KOPRI 13649, which was isolated from an acrylic surface at the seashore at Gangneung, Korea, is reported here. The nearly complete 16S rRNA gene sequence of strain KOPRI 13649 was determined and was found to have a high level of similarity with that of (95.0–95.6 %). In addition, phylogenetic analysis and comparison with closely related strains confirmed that the strain represented a novel member of the genus . The major respiratory quinone of strain KOPRI 13649 was MK-6 and the DNA G+C content was 29.8 mol%. The dominant fatty acid methyl esters were i-15 : 0, a-15 : 0, i-16 : 0, i-15 : 110, 16 : 17 and 15 : 0. Growth was observed at 10–34 °C (optimum 30 °C), at pH 6–9 (optimum 6.5–8.0) and with 0.5–4 % NaCl (optimum 1 %). On the basis of the polyphasic taxonomic evidence presented, strain KOPRI 13649 (=KCCM 42261=JCM 13413) should be classified as the type strain of a novel species in the genus , for which the name sp. nov. is proposed.

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2006-05-01
2024-03-28
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References

  1. Bowman J. P., Nichols D. S. 2005; Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp.nov., Subsaxibacter broadyi gen. nov., sp. nov.,Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia,Gelidibacter and Gillisia . Int J Syst Evol Microbiol 55, 1471–1486 [CrossRef]
  2. Bowman J. P., McCammon S. A., Brown J. L., Nichols P. D., McMeekin T. A. 1997; Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47:670–677 [CrossRef]
    [Google Scholar]
  3. Brinkmeyer R., Knittel K., Jurgens J., Weyland H., Amann R., Helmke E. 2003; Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl Environ Microbiol 69:6610–6619 [CrossRef]
    [Google Scholar]
  4. Collins M. D. 1985; Isoprenoid quinone analysis in bacterial classification and identification. In Chemical Methods in Bacterial Systematics pp  267–287 Edited by Goodfellow M., Minnikin D. E. London: Academic Press;
    [Google Scholar]
  5. DeLong E. F., Franks D. G., Alldredge A. L. 1993; Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol Oceanogr 38:924–934 [CrossRef]
    [Google Scholar]
  6. Ivanova E. P., Alexeeva Y. V., Flavier S., Wright J. P., Zhukova N. V., Gorshkova N. M., Mikhailov V. V., Nicolau D. V., Christen R. 2004; Formosa algae gen. nov., sp. nov. a novel member of the family Flavobacteriaceae . Int J Syst Evol Microbiol 54705–711 [CrossRef]
    [Google Scholar]
  7. Kim S.-J., Chun J., Bae K. S., Kim Y.-C. 2000; Polyphasic assignment of an aromatic degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov. Int J Syst Evol Microbiol 50:1641–1647 [CrossRef]
    [Google Scholar]
  8. Kwon K. K., Lee H.-S., Yang S. H., Kim S.-J. 2005a; Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage ( Kordiimonadales ord. nov.) in the α - Proteobacteria . Int J Syst Evol Microbiol 55, 2033–2037 [CrossRef]
  9. Kwon K. K., Lee H.-S., Jung H.-B., Kang J.-H., Kim S.-J. 2005b; Yeosuana aromativorans gen. nov., sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae , isolated from estuarine sediment of the South Sea, Korea. Int J Syst Evol Microbiol 56:727–732
    [Google Scholar]
  10. Lau S. C. K., Tsoi M. M. Y., Li X. 7 other authors 2005; Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. Int J Syst Evol Microbiol 55:1589–1592 [CrossRef]
    [Google Scholar]
  11. Li L., Kato C., Horikoshi K. 1999; Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench. Mar Biotechnol 1:391–400 [CrossRef]
    [Google Scholar]
  12. Macián M. C., Pujalte M. J., Marquez M. C., Ludwig W., Ventosa A., Garay E., Schleifer K. H. 2002; Gelidibacter mesophilus sp. nov., a novel marine bacterium in the family Flavobacteriaceae . Int J Syst Evol Microbiol 52:1325–1329 [CrossRef]
    [Google Scholar]
  13. Nedashkovskaya O. I., Kim S. B., Han S. K. 7 other authors 2004; Algibacter lectus gen. nov., sp. nov. a novel member of the family Flavobacteriaceae isolated from green algae. Int J Syst Evol Microbiol 54:1257–1261 [CrossRef]
    [Google Scholar]
  14. Nedashkovskaya O. I., Kim S. B., Han S. K. 9 other authors &; 2005a; Winogradskyella thalassocola gen.nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov.,marine bacteria of the family Flavobacteriaceae . Int J Syst Evol Microbiol 55:49–55 [CrossRef]
    [Google Scholar]
  15. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Frolova G. M., Mikhailov V. V., Bae K. S. 2005b; Bizionia paragorgiae gen. nov., sp. nov. a novel bacterium of the family Flavobacteriaceae isolated from the soft coral Paragorgia arborea . Int J Syst Evol Microbiol 55:375–378 [CrossRef]
    [Google Scholar]
  16. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp  607–654 Edited by Gerhardt P., Murray R. G. E., Wood R. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  17. Sohn J. H., Kwon K. K., Kang J.-H., Jung H.-B., Kim S.-J. 2004; Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 54:1483–1487 [CrossRef]
    [Google Scholar]
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